Bacillus rugosus: M0696_03705
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Entry
M0696_03705 CDS
T08218
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bry
Bacillus rugosus
Pathway
bry03030
DNA replication
bry03410
Base excision repair
bry03420
Nucleotide excision repair
bry03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bry00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
M0696_03705 (ligA)
03410 Base excision repair
M0696_03705 (ligA)
03420 Nucleotide excision repair
M0696_03705 (ligA)
03430 Mismatch repair
M0696_03705 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bry03032
]
M0696_03705 (ligA)
03400 DNA repair and recombination proteins [BR:
bry03400
]
M0696_03705 (ligA)
Enzymes [BR:
bry01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
M0696_03705 (ligA)
DNA replication proteins [BR:
bry03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
M0696_03705 (ligA)
DNA repair and recombination proteins [BR:
bry03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
M0696_03705 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
M0696_03705 (ligA)
MMR (mismatch excision repair)
DNA ligase
M0696_03705 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
M0696_03705 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
HHH
PTCB-BRCT
BRCT_2
Zn_ribbon_NUD
HHH_8
5_3_exonuc
HNOB
zf-IS66
HHH_3
zf-tcix
Motif
Other DBs
NCBI-ProteinID:
UPV79850
LinkDB
All DBs
Position
712719..714725
Genome browser
AA seq
668 aa
AA seq
DB search
MDKETAKQRADELRRTINKYSYEYYTLDEPSVPDAEYDRLMQELIAIEEEHPDLRTPDSP
TQRVGGAVLEAFQKVTHGTPMLSLGNAFNADDLRDFDRRVRQAVGDDVAYNVELKIDGLA
VSLRYEDGYFVRGATRGDGTTGEDITENLKTIRNIPLKMKRDLSIEVRGEAYMPKRSFEA
LNEERIKNEEEPFANPRNAAAGSLRQLDPKIAAKRNLDIFVYSIAELDEMGVETQSQGLD
FLDEIGFKTNQERKKCDSIEEVIALIDEFQAKRADLPYEIDGIVIKLDSLDQQEELGFTA
KSPRWAIAYKFPAEEVVTKLLDIELNVGRTGVITPTAILEPVKVAGTTVSRASLHNEDLI
KEKDIRILDKVVIKKAGDIIPEVVNVLVEQRTGEEKEFSMPTECPECGSELVRIEGEVAL
RCINPECPAQIREGLIHFVSRNAMNIDGLGERVITQLFEENLVRNVADLYKLTKEQVIQL
ERMGEKSTENLISSIQKSKENSLERLLFGLGIRFIGSKAAKTLAMHFESLENLKKASEEE
LLAIDEIGEKMADAVITYFHKEEMLDLLNELQELGVNTLYKGPKKVKAEDSDSYFAGKTI
VLTGKLEELSRNDAKAQIEALGGKLTGSVSKNTDLVIAGEAAGSKLTKAQELNIEVWNEE
QLMGELKK
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atggacaaagaaacagcgaagcagcgggcagacgaactgcgccgcaccatcaacaagtat
agctatgaatattacaccttagatgaaccgagcgtccctgatgctgaatacgacagattg
atgcaggagctgattgcgatcgaggaggagcatccagacctcagaacacctgactctcct
acgcagcgtgtcggcggagccgtgcttgaagcgtttcagaaagtcacacacggcacgccg
atgctcagtctgggcaacgcctttaatgccgatgatcttcgtgatttcgaccgccgggtg
cgccaggccgtcggcgacgatgtggcgtataatgtggagctgaaaatagacggtcttgct
gtttctctccgttatgaagacggctattttgtcagaggagccacaagaggtgacggaacg
acgggagaggatattacggagaatctgaagacgatccgcaatattccgctcaaaatgaaa
cgtgatctgtcgatcgaagtgcgcggcgaggcgtatatgccgaagcgttcgtttgaagcg
ctcaatgaggaacggatcaaaaacgaagaagaaccgttcgccaatccgcgaaatgccgcc
gcgggatcactcagacagctcgatccgaaaattgcagcgaaacgaaacctcgatatcttc
gtctacagtatagcggagcttgacgagatgggtgtggagacgcaaagccaggggcttgat
tttctcgacgaaatcggatttaaaacaaaccaggaacgaaaaaaatgcgacagcatagaa
gaagttattgcactgatcgatgagtttcaggctaaacgcgctgacctcccgtatgaaatt
gacggtatcgtgattaaacttgattcccttgatcagcaggaggagcttggttttacggcg
aaaagcccgcgttgggccatcgcgtataaatttcctgcagaagaggtcgtgacaaagctt
ctcgatatcgaattaaatgtcggcagaacgggtgtgattacgccgaccgcgattcttgag
ccggtaaaagttgccggcacaacggtctcaagagcatcccttcataacgaagatttaatt
aaagagaaggacattcggatcttggataaggtcgtcatcaaaaaagcgggcgatatcatt
cctgaagtcgtgaacgtcctcgttgaacagcgcacaggagaagaaaaggaattcagcatg
cccacggaatgccctgaatgcgggagcgaactcgtccgcatcgaaggagaagtggcgctt
cgctgcattaaccctgaatgtccggcgcaaatccgggaagggctgatccatttcgtttcc
cgcaatgccatgaacattgacggacttggcgaacgagtcatcacacagctgtttgaggag
aaccttgtccgcaatgtggcggatttatataagctgacgaaggaacaggtcatccagctc
gagcgtatgggagaaaaatctactgaaaacctgatcagctccatccaaaaatcaaaagaa
aattcgttagagcgcctgctgttcggactcggcatccgctttatcggttcaaaggccgca
aagacgcttgccatgcattttgaaagcttggagaacctgaaaaaagcttcagaagaggag
cttctcgcgattgatgaaatcggtgaaaaaatggctgacgcggtcatcacttattttcat
aaagaagaaatgcttgatctcttgaatgaacttcaggagttgggtgtaaatacactatac
aaaggcccgaaaaaagtaaaagcagaggacagcgattcttactttgccggtaaaacaatt
gttctgacaggaaagctggaagaactgtcaagaaacgatgccaaagcgcaaatcgaagcg
ctcggcggaaagctgactggaagcgtcagcaaaaacacagacttggtcatcgccggcgaa
gcggcgggaagcaaactgacaaaagcacaagagctgaacattgaagtgtggaatgaagaa
cagttaatgggagagctaaagaaataa
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