Bacteroides salyersiae: K6V25_15600
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Entry
K6V25_15600 CDS
T08777
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bsal
Bacteroides salyersiae
Pathway
bsal03030
DNA replication
bsal03410
Base excision repair
bsal03420
Nucleotide excision repair
bsal03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bsal00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
K6V25_15600 (ligA)
03410 Base excision repair
K6V25_15600 (ligA)
03420 Nucleotide excision repair
K6V25_15600 (ligA)
03430 Mismatch repair
K6V25_15600 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bsal03032
]
K6V25_15600 (ligA)
03400 DNA repair and recombination proteins [BR:
bsal03400
]
K6V25_15600 (ligA)
Enzymes [BR:
bsal01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
K6V25_15600 (ligA)
DNA replication proteins [BR:
bsal03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
K6V25_15600 (ligA)
DNA repair and recombination proteins [BR:
bsal03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
K6V25_15600 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
K6V25_15600 (ligA)
MMR (mismatch excision repair)
DNA ligase
K6V25_15600 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
K6V25_15600 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
Nlig-Ia
BRCT
HHH_5
DNA_ligase_ZBD
HHH
PTCB-BRCT
DUF5689
YurS_helical
BRCT_2
RNA_pol_A_CTD
EAD10
Motif
Other DBs
NCBI-ProteinID:
UBD64333
LinkDB
All DBs
Position
4064273..4066273
Genome browser
AA seq
666 aa
AA seq
DB search
MTVKEKIEELRAELHRHNYNYYVLNTPEISDKEFDDMMRELQDLEQAYPEYKDDNSPTMR
VGSDLNKNFTQVPHKYPMLSLGNTYSENEVTDFYERVKKALNEDFEICCEMKYDGTSISL
TYENGKLVRAVTRGDGEKGDDVTDNVKTIRTIPLVLHGSNYPQSFEIRGEILMSWDVFEE
LNREKEAREEPLFANPRNAASGTLKLQNSSIVASRKLDAYLYYLLGENLPCDGHYENLQE
AAKWGFKTSNAMHKCRTLEEIFDYIKYWDVERKNLPVATDGIVLKVNSLKQQKNLGFTAK
SPRWAIAYKFQAERALTRLNLVTYQVGRTGAVTPVANLDPVQLSGTIVKRASLHNADIIE
GLDLHIGDMVYVEKGGEIIPKITGVNTSARSFMIGEKVKFITNCPECGSKLVRYEGEAAH
YCPNETACPPQIKGKIEHFISRRAMNIDGLGPETVDMFYRLGLIKNTADLYRLTADDIKG
LDRMGEKSAENIINGINQSKEVPFERVIFALGIRFVGETVAKKIAKAFKNIEELENADLE
TLITIDEIGEKIAQSILNYFSNESNRELVKRLREAGLQLYRTEEDLSGYTDKLAGQSIVI
SGVFTHYSRDEYKDLIEKHGGKNVGSISAKTSFILAGENMGPAKLEKANKLGVKIMNEEE
FLKLIS
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
atgactgtaaaagaaaaaatagaagaactccgtgccgaacttcaccggcataattataat
tattacgtattgaatactccagagatttcagataaggaattcgacgacatgatgcgcgaa
ttacaggatctggaacaagcctatccggaatataaagacgataactctcctacaatgcgt
gtaggtagcgaccttaataagaattttacgcaagtaccacataaatacccaatgttgtct
ttgggaaatacatactcggaaaacgaagtgaccgatttttatgaaagagtaaaaaaggct
ttgaatgaagattttgagatatgctgtgagatgaaatacgatggaacctccatttcactc
acatatgaaaacggcaaactggtgcgtgcagtaacccgcggtgacggagaaaaaggagac
gacgtgaccgataatgtaaaaacaatccgcactattccgcttgtacttcatggcagcaat
tatccgcaatcgttcgaaattcgaggcgaaattctcatgtcatgggatgtattcgaagag
ttgaaccgggaaaaagaagcacgcgaagaaccattatttgccaatccgagaaatgccgct
tcaggtacactgaaattacagaactcttctatcgtagcttcccgcaagctggatgcttat
ctctattacctgctcggagagaatttaccatgcgacggacattatgagaatttacaggaa
gcagcaaaatggggattcaaaacatcgaatgccatgcataaatgtcgcacgttagaggaa
atatttgattatataaaatattgggatgtagaacggaaaaacctgccggttgccacggat
ggtatcgtactcaaggtaaacagtctgaagcagcaaaaaaatttaggctttactgccaaa
tccccccgatgggccattgcatacaaatttcaggcagaacgcgctcttacccggctgaat
cttgtaacttaccaggtaggaagaacaggagctgttactccggtagccaacttggatccg
gtacagctttcgggcacgatcgtaaaacgtgcatcactacacaacgcagatatcattgaa
ggactcgaccttcacatcggtgacatggtatatgtggaaaagggcggagaaatcattcct
aaaattacaggagtaaacacttccgcacgttccttcatgatcggagaaaaagtgaaattc
attacaaattgccccgaatgcggtagtaaactggtacgatacgaaggtgaagccgcccat
tattgccccaatgaaacagcttgccctccgcagataaaaggtaaaattgaacattttatc
agccggcgcgctatgaatatcgacgggctcgggccggagaccgtagacatgttctatcgg
ttaggactgataaaaaacaccgccgacttgtacagacttacggccgatgatataaaaggt
ctcgaccgaatgggagaaaaatcggctgagaacatcattaatggcatcaatcaaagcaag
gaggttccttttgaacgtgtcatctttgcattaggtatccgttttgtgggcgagactgtg
gcaaaaaaaatagccaaagcatttaaaaacatagaagaactggaaaacgcagacttggaa
accctaataaccattgatgaaatcggtgaaaagattgcgcaaagtattctaaattatttc
tcgaacgaatcaaatagggaacttgtaaagcgactgagagaagccggcttacaactgtat
cgtacggaagaggatttaagtggatacaccgataagttagcagggcaatccatcgttatc
agcggagtctttacccactattcgcgggatgaatacaaagacctcatagaaaaacatggc
ggtaagaatgtaggtagtatttctgccaagacaagtttcattctggcaggtgaaaatatg
ggaccggccaaactggaaaaggcaaacaaattaggggttaagattatgaacgaagaggaa
tttctaaagctcatatcgtag
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