KEGG   Bacterioplanes sanyensis: CHH28_13560
Entry
CHH28_13560       CDS       T04982                                 
Name
(GenBank) DNA ligase (NAD(+)) LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
bsan  Bacterioplanes sanyensis
Pathway
bsan03030  DNA replication
bsan03410  Base excision repair
bsan03420  Nucleotide excision repair
bsan03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:bsan00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    CHH28_13560
   03410 Base excision repair
    CHH28_13560
   03420 Nucleotide excision repair
    CHH28_13560
   03430 Mismatch repair
    CHH28_13560
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:bsan03032]
    CHH28_13560
   03400 DNA repair and recombination proteins [BR:bsan03400]
    CHH28_13560
Enzymes [BR:bsan01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     CHH28_13560
DNA replication proteins [BR:bsan03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     CHH28_13560
DNA repair and recombination proteins [BR:bsan03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     CHH28_13560
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     CHH28_13560
   MMR (mismatch excision repair)
    DNA ligase
     CHH28_13560
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      CHH28_13560
SSDB
Motif
Pfam: DNA_ligase_aden OB_DNA_ligase HHH_2 HHH_5 BRCT DNA_ligase_ZBD PTCB-BRCT Nlig-Ia HHH RNA_ligase RTT107_BRCT_5
Other DBs
NCBI-ProteinID: ASP39636
UniProt: A0A222FM12
LinkDB
Position
2934078..2936120
AA seq 680 aa
MTDTIPDHNQAQARVAQLHEQLHRYNREYYQQDNPSVPDAEYDRLLRELQQLEQAYPDLL
SDDSPSQRVGSLPLSAFTQVAHEQPMLSLDNAMNAGEFADFYARLQRLAASEQEIALVCE
PKLDGAAVSLLYENGRLLRAATRGDGSTGEDITANVRTIGNVPLRLEGEVPSRVEVRGEV
YMPLAGFERYNQQARDNGGKVFANPRNAAAGSLRQLDSRVTATRPLEFCAYGVGVVSDDF
ARPDTLFEVFQCIRRWGLKVNDELTLADNLEQAQQFYQRLGDKRHRLAYEIDGSVFKVND
LALQQKMGFVARAPRWAVAYKFPAVEQMTRLNGVDFQVGRTGAITPVARLEPVHVAGVMV
SNATLHNMDEIERLDARIGDTVIVRRAGDVIPQIVSVVQDMRPQDAETITMPLDCPVCAS
LVERVQGEAVARCTGGLVCAAQRKEAIKHFASRKALDIEGLGDKLIEQLVDADLIDSVDD
LFHLQESQLAALERMGPKSAANVIAAIDAAKNTTLPRFLYALGIREVGVVTAQNLANHFG
FLQRIMDADQDALLAVNDVGDIVAAHIVNFFREEHNRDTIAQLRAAGVDWPEAEPQRDEE
APLAGQVAVVTGTLSSMTRDEAKQALQTLGVKVTGSVSAKTDFLVAGEKAGSKLAKAQSL
QVEVLDEAAFMNLLQQHGVQ
NT seq 2043 nt   +upstreamnt  +downstreamnt
atgacagacacgataccggatcacaaccaagcgcaagcacgtgtggcgcagctgcacgag
cagttgcatcgttacaatcgcgaatattatcaacaagacaatccgagtgtgccggatgca
gaatacgaccgcttgctgcgtgagttgcagcaactggaacaggcctatccggatttactc
agcgacgactcccccagtcagcgtgtcggctctttgccactcagtgcctttacccaggta
gcgcacgagcaacccatgttatcgctcgataacgccatgaatgcgggcgagtttgccgat
ttttacgcccgtttacagcgcttagccgctagtgagcaagagattgcgttggtgtgcgag
cccaagctggatggcgctgccgtcagcttgctgtatgagaacggacgcctgctgcgcgcc
gccacccgtggtgatggcagcacgggtgaagacattactgccaatgtgcgcaccattggc
aatgtgcctttgcgcttggagggcgaagtgccgtctcgcgttgaggtgcgcggcgaagtc
tacatgccgctggcaggattcgaacgctataaccagcaggcgcgtgacaacggcggcaaa
gtatttgccaatcctcgcaatgctgcagcaggctcgctgcgacagctggactctcgcgtg
acggcgacccggccgttggagttctgtgcctacggtgtgggcgttgtgagcgacgatttt
gcccgcccggataccttgtttgaggtgtttcaatgcattcgccgctgggggctaaaggtc
aatgacgaactgacgctggccgacaaccttgaacaggcgcagcagttttatcagcgtctg
ggcgataaacgccatcgcttggcgtatgaaattgatggcagtgtgtttaaggtcaacgac
ctggcgttgcagcaaaaaatgggctttgtcgctcgcgctccgcgctgggccgtggcttat
aagtttcctgccgtggagcaaatgactcggctgaatggcgttgattttcaggttgggcgc
accggtgccattactccggtcgcgcgcctggaacccgtgcatgtggctggtgtgatggtg
agcaacgccacgttgcacaatatggatgaaatcgaacgcttggacgctcgtataggcgat
accgtcatcgtgcgccgagctggcgatgtgattccgcaaattgtgtcggtggtgcaggac
atgcgcccgcaggacgctgaaaccataaccatgccgttggattgccctgtctgcgcatcc
ttggtggagcgggtacaaggcgaagcggtggcgcgctgtaccggcgggctggtgtgcgcc
gcacagcgtaaagaggccattaaacacttcgcatcgcgcaaggcgctggacatcgaaggg
ttgggcgacaagctgatcgagcaattggtcgatgccgatctgatcgactccgtggatgac
ttatttcatttgcaagaatcgcagctggcggcattagagcgcatggggcctaagtcggct
gccaatgttatcgcggccattgatgctgcgaaaaataccacactgccgcgctttctctat
gccttgggtattcgtgaagtgggcgtggtgacggcgcaaaatctggccaaccattttggc
ttcttgcagcgcattatggacgccgaccaagacgccttgttggcggtcaatgacgtcggt
gacatcgtcgcggcccatatcgttaacttctttcgtgaagaacataatcgcgacaccatt
gcgcaactacgcgcagcgggagtggactggccggaagccgagccgcaacgcgatgaagaa
gcgcccttggccgggcaggtggcggtggtgacgggcacgctgtcgtctatgacgcgagac
gaggccaagcaagcgctgcaaacgctgggggtaaaagtcaccggcagcgtatcggcgaaa
acagactttctggtggcgggtgaaaaagctggcagtaagttggccaaagcccagtctttg
caggtggaggtcttggacgaagccgcctttatgaacctgctacagcagcacggagtgcag
tga

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