Brachybacterium saurashtrense: DWV08_06900
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Entry
DWV08_06900 CDS
T05573
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bsau
Brachybacterium saurashtrense
Pathway
bsau03030
DNA replication
bsau03410
Base excision repair
bsau03420
Nucleotide excision repair
bsau03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bsau00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DWV08_06900
03410 Base excision repair
DWV08_06900
03420 Nucleotide excision repair
DWV08_06900
03430 Mismatch repair
DWV08_06900
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bsau03032
]
DWV08_06900
03400 DNA repair and recombination proteins [BR:
bsau03400
]
DWV08_06900
Enzymes [BR:
bsau01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
DWV08_06900
DNA replication proteins [BR:
bsau03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
DWV08_06900
DNA repair and recombination proteins [BR:
bsau03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
DWV08_06900
NER (nucleotide excision repair)
GGR (global genome repair) factors
DWV08_06900
MMR (mismatch excision repair)
DNA ligase
DWV08_06900
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
DWV08_06900
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
HHH
MAD
Motif
Other DBs
NCBI-ProteinID:
AXK45372
UniProt:
A0A345YN70
LinkDB
All DBs
Position
complement(1521029..1523608)
Genome browser
AA seq
859 aa
AA seq
DB search
MRHNVPVTTNQQGTETAARAQQRVAELTAQIEQARADYYEHDAPTMADGEYDALEKELRE
LEAENPQLASEDSPTRTVGGTAATGLPTLEHAERMQSLDNVFSLEELREWCAHVAAELGG
TVRYLTELKIDGLAINLRYEHGELVTAATRGDGRTGEDVTVNALRIEGIPQRLEGEGHPP
LVEVRGEVFMPTEDFTRLNDLQVELRERAVAEARTRWEARAAEGRRPFDEQREQLAATRR
FPSFANPRNTAAGGLRQQLDKKDGLEREAGEARLAALRLTVHGLGAWPDPPAGSQSEMYE
LLKSWGLPTSAHLGVVSTVDEVAAYVEHHGEHRHDLEHEIDGIVVKVDSFAQQRALGSTS
RAPRWATAVKFPPEEVTTKLLDIQVQVGRTGRVTPFGIMEPVLVAGSTVEKATLHNQFDV
ERKGVLIGDTIVLRKAGDVIPEILGPVESLRDGTERPFVMPTECPACGTEIRPEKEGDKD
WRCPNRRDCPAQVTGRVEHAGSRGAFDIESLGEESAIALTDPDKRRPEALAALTEDHAIY
LPIRDVADTELDAFVVVKNGEVVQGTDGVPLLRLTSAEDPLLPAIQQPVIDTGADLFDLT
ADALADVVVWQPERRDGEPTGDWRIQPAFWTRPQFRHYKRENVWKQVKEPAALKTTGELI
AELEKAKDQPLWRVLVALSIRHVGPAAARSLATAYGSMDAIREASVEQLAETDGVGQIIA
EAVVEWFEVDWHREIVDGWAASGVRMADEVEEGFVKTLEGLTVVVTGGLDGFSRDGAKEA
IITRGGKASGSVSKKTDFVVVGENAGSKETKARDLGLRILDEADFVALLEGGPDAVALPE
ANEEDGAGADEAEAEAGTD
NT seq
2580 nt
NT seq
+upstream
nt +downstream
nt
gtgcgtcacaatgttccggtgaccacgaaccagcagggaaccgagaccgcggcccgtgcg
cagcagcgcgtcgccgagctcaccgcgcagatcgagcaggcgcgcgcggactactacgag
cacgatgcgcccacgatggccgacggcgagtacgacgcgctggagaaggagctgcgggag
ctcgaggcggagaacccgcagctggcctccgaggactcgcccacccgcaccgtgggcggt
accgcggccaccggcctgcccacgctcgagcacgctgagcggatgcagtcgctggacaac
gtgttctcgctcgaggagctgcgggagtggtgcgcccacgtggccgcggagctcggcggg
acggtgcgctacctcaccgagctgaagatcgacggtctcgcgatcaacctccggtacgag
cacggcgagctcgtcaccgccgcgacccgcggcgacggccgcaccggcgaggacgttacc
gtcaacgccctgcgcatcgagggcatcccgcagcgcctggagggcgaggggcatccgccg
ctggtggaggtgcgcggcgaggtgttcatgcccaccgaggacttcacccgcctcaacgac
cttcaggtggagctgcgtgagcgggccgtggccgaggcccgcacccgctgggaggcgcgg
gcggcggaggggcgtcgacccttcgacgagcagcgcgagcagctcgccgccacccgccgc
ttcccctccttcgcgaacccccgcaacaccgccgcgggcggcctgcgccagcagctggac
aagaaggacgggctggagcgggaggcgggcgaggcgcgcttggccgcgctgcgcctcacc
gtgcacggcctcggcgcctggccggacccgccggcgggctcccagagcgagatgtacgag
ctgctgaagtcctggggcctgcccacctccgcccatctgggcgtggtgagcaccgtcgac
gaggtcgccgcctacgtcgagcaccacggcgagcaccgccatgacctcgagcacgagatc
gacgggatcgtggtgaaggtggactccttcgcgcagcagcgcgcgctcggctccacctcc
cgcgccccgcgctgggccaccgccgtgaagttccccccggaggaggtcacgaccaagctg
ctggacatccaggtgcaggtgggccgcaccgggcgcgtcacccccttcgggatcatggag
ccggtgctggtggccggctccacggtggagaaggccacgctgcacaaccagttcgacgtg
gagcgcaagggggtgctgatcggggacacgatcgtgctgcgcaaggcgggggacgtgata
ccggagatcctgggcccggtggagtcgctgcgcgacggcaccgagcgccccttcgtgatg
ccgacggagtgccccgcctgcggcaccgagatccggcccgagaaggagggggacaaggac
tggcgctgcccgaaccgccgtgactgccccgcccaggtgaccgggcgcgtggagcacgcc
ggctcccgcggcgccttcgacatcgagtcgctcggcgaggagagcgcgatcgcgctcacc
gatccggacaagcgccgccccgaggcgctcgccgcgctcaccgaggaccacgcgatctat
ctcccgatccgggacgtggcggacaccgagctggacgccttcgtggtcgtcaagaacggg
gaggtcgtccaggggaccgacggggtcccgctgctgcgcctcacctccgccgaggacccg
ctgctgcccgcgatccagcagcccgtcatcgacaccggcgcggacctcttcgacctcacc
gcggacgcgctcgccgacgtggtggtgtggcagcccgagcggcgcgacggcgagccgacg
ggggactggcgcatccagcccgccttctggacccgcccccagttccgccactacaagcgc
gagaacgtctggaagcaggtcaaggagcccgcggcgctgaagaccaccggcgagctgatc
gccgagctcgagaaggcgaaggaccagccgctgtggcgggtgctggtggcgctgtcgatc
cggcacgtgggccctgccgccgcgcgctcgctcgccaccgcctacggctcgatggacgcg
atccgcgaggcgagcgtcgaacagctcgcggagaccgacggggtcgggcagatcatcgcc
gaggccgtggtggagtggttcgaggtcgactggcaccgcgagatcgtggacggctgggcc
gcctccggcgtgcgcatggcggacgaggtggaggagggcttcgtgaagaccctcgagggc
ctcaccgtggtggtcaccggcgggctggacggcttcagccgcgacggcgcgaaggaggcg
atcatcacccgcggcgggaaggcctccggctccgtctcgaagaagacggacttcgtggtg
gtcggcgagaacgccggctcgaaggagaccaaggcccgcgacctcggcctgcgcatcctc
gacgaggccgacttcgtggccctgctcgagggcgggccggacgcggtcgccctgccggag
gcgaacgaggaggacggcgccggcgcggacgaggccgaggcggaggcggggaccgactga
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