Bipolaris sorokiniana: COCSADRAFT_34128
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Entry
COCSADRAFT_34128 CDS
T03124
Name
(RefSeq) hypothetical protein
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
bsc
Bipolaris sorokiniana
Pathway
bsc03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bsc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
COCSADRAFT_34128
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bsc03400
]
COCSADRAFT_34128
Enzymes [BR:
bsc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
COCSADRAFT_34128
DNA repair and recombination proteins [BR:
bsc03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
COCSADRAFT_34128
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
Motif
Other DBs
NCBI-GeneID:
19137466
NCBI-ProteinID:
XP_007696547
JGI:
Cocsa1_34128
UniProt:
M2SY88
LinkDB
All DBs
Position
Unknown
AA seq
885 aa
AA seq
DB search
MSLTFNAICSLLQDIENISTNGPQPPSKQKQEVIQHVVLDWFQNQRIALDDPDTDGGAVL
SILLPHRRKDRVYGLQAPLLAKKLSRLLTFSHGQRTLFESWKTGTHGDLGAYIERTMKPW
DGTFSSKPDITIKRVNCLLVQLAASCRFSDEKTRRNRDPGFDIDNELKNIITRLESWEAK
WLVRLLLRDYCIIELDERVVTRHYHFLLPELLAFQNDYEAAFDVLKGELSCYPAVPESWE
EEPMRVEAAKRLKARVGVKIGRPTFLKAWSFGNCFKLVGDGAWAAEVKYDGEYCEIHVDL
ENENSNLRIFSKNGKDATADRTALHGTIRNALRIGQPDSLFKKNCIVTGEMVVYSDKEKK
ILPFSKIRKYVTRSGSFRVTLNSSAVHQQEHLMIVFFDVLTVDDEPVLRHCLEDRRKILH
KLIHVMPGRSKLSQWTLLDFKTGSGITDLKQTFARTLADRQEGLVLKPLQAPYLPLLSEQ
GQRQTGFFIKVKKDYLGDMGGERDLGDFAVIGASFDAQAATKTNLKPLHWTHFYLGCCVN
RDAALLTGAKARFTVVATLSVEKCIPRFDAKYLNIQGYIRQTTLHESGATSEFDIINFRD
HYYSRRMTVAFRNPLIVEILGGGFDKSPHTSFEMLRHPRVQKIHHDRTWEGAVTMQDLER
MAQEKFSVPDADKLDGHARDVALLVEKYARVRNGPQETVVTGYTTQKMIQRMSPCPLRET
PQSSPTEAESPVTSGGSQIQQIQSDTDTDTEIDTDRSTSDGSADKSVQAKGLRASRELRS
CKSTFEQVTALVPDPQSLTAQEAASSTVNDSSLLSGVVTGKRRSLFEPISPPNIKRRRSR
CPLQVTDGNWQGSRLDLHLDTSRKSGCISGEEGREEENTLPKVEK
NT seq
2658 nt
NT seq
+upstream
nt +downstream
nt
atgagtctcacattcaatgctatctgtagcctattgcaagacattgagaatatttccaca
aatggaccgcaaccgccttcaaagcaaaaacaagaggtcatccagcacgttgttttggac
tggttccaaaatcaaagaattgccctcgacgatccagatacagatggcggggctgtgctc
tccatcttacttccgcaccgaaggaaagaccgcgtgtacggtttgcaagcgcccttgctc
gcgaagaaactctcacgcctactcacctttagtcatgggcaacgcacactatttgaaagc
tggaagacgggcacccatggcgacctaggtgcatacatcgaacgcaccatgaagccttgg
gatggtaccttctccagcaaaccagacatcacaattaaaagagttaactgcctgttggta
caattggcagccagttgtagattctcggatgagaaaaccagaagaaatcgtgatccaggg
tttgacatcgacaatgaactcaaaaatatcatcacaaggcttgagtcttgggaagcaaaa
tggctagtccgccttctacttcgagactactgcattattgaactggacgaaagagttgta
acgcggcactatcactttctgttaccagagctgttggcgtttcagaacgactacgaagca
gcctttgatgtactcaaaggtgaacttagttgttatccggcggtgcctgagtcgtgggaa
gaggaacccatgcgcgttgaggcagcgaaaagactaaaagctagggtcggcgtcaagatt
gggcgaccgaccttcctaaaagcatggtcgttcggcaactgttttaagcttgttggcgat
ggcgcttgggctgccgaagtcaaatacgacggcgaatactgtgagatccacgtcgatttg
gaaaatgaaaatagcaacctacgaatcttctccaagaatggcaaagatgcaaccgcagat
cgtactgctctacacggcacaatccgcaacgctcttcgtataggccagccagactccttg
tttaaaaagaactgtatcgttacgggcgaaatggtggtatacagcgacaaggagaagaag
atactgccattctcgaagattcgcaagtatgtcacacgctcaggatccttcagagtcacg
ctcaacagctctgcggttcatcaacaggagcatctcatgattgtcttctttgatgttttg
actgtagatgacgagcccgttttgcgtcactgcctcgaggaccgccgcaaaattcttcac
aaacttatccatgtcatgccaggtcggtccaagctctcacagtggaccttgttggatttt
aagacagggagtggtataacagaccttaaacagacattcgcccgcaccctagccgatcgc
caagaaggattggtactgaaaccgttgcaagcgccctatctgcccttgctatctgagcaa
ggtcagcgtcaaacaggtttcttcatcaaggtaaagaaggattacttaggcgatatgggc
ggtgagcgagacttgggcgatttcgctgtgattggagccagttttgacgcgcaggctgca
acgaagacgaatctaaagcctctacactggacacacttttacctaggatgctgcgtcaac
agggatgcggccctactgacaggggccaaggcaaggttcactgtcgtcgctactttgagc
gttgaaaagtgtattccaaggtttgacgcaaagtacctgaatatccagggctatatccgt
cagaccactttgcatgagagtggcgccacctctgaattcgacataataaatttcagggac
cactactacagccggcgtatgactgttgccttcaggaaccccttgatcgttgagattctt
gggggagggttcgacaagtcgcctcatacgtcatttgagatgctacgtcatccgcgggtt
cagaagattcaccatgataggacgtgggagggtgcggtcactatgcaagacttggagcgc
atggctcaggagaaattttcagtgcccgatgcggacaagcttgatgggcatgcgagagat
gtcgcattgttggttgagaagtatgccagggtgagaaatgggcctcaggagactgttgtt
acggggtatacgacgcagaagatgatacaacggatgagtccttgtcctttgcgagagacg
ccgcagagttcgcccacagaggccgagtcccctgtgacgtctggtggttctcagatccag
cagatacaatctgacactgacacagacacagagattgatacagaccggtcaacttctgat
ggttctgctgacaaaagcgttcaggctaagggcctacgcgcttcccgcgaattaaggtca
tgcaaaagtacttttgagcaggtgactgccttggtcccggacccacagagtctgacagca
caagaggctgctagctcgactgtgaatgattccagcctgctgtctggtgtggtgacgggc
aaaagacggagtctctttgaacccattagtccgccgaacattaaacggagaaggagtcgt
tgcccactacaggtcacggatggaaattggcaggggagccgcttagatttgcacttggac
acgagtaggaaaagcggttgtatatccggggaagaagggagagaagaagagaatacgttg
cctaaagtagaaaaatag
DBGET
integrated database retrieval system
