Bartonella schoenbuchensis: AAJP84_00615
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Entry
AAJP84_00615 CDS
T10346
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bsch Bartonella schoenbuchensis
Pathway
bsch03030
DNA replication
bsch03410
Base excision repair
bsch03420
Nucleotide excision repair
bsch03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bsch00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AAJP84_00615 (ligA)
03410 Base excision repair
AAJP84_00615 (ligA)
03420 Nucleotide excision repair
AAJP84_00615 (ligA)
03430 Mismatch repair
AAJP84_00615 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bsch03032
]
AAJP84_00615 (ligA)
03400 DNA repair and recombination proteins [BR:
bsch03400
]
AAJP84_00615 (ligA)
Enzymes [BR:
bsch01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AAJP84_00615 (ligA)
DNA replication proteins [BR:
bsch03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AAJP84_00615 (ligA)
DNA repair and recombination proteins [BR:
bsch03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AAJP84_00615 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AAJP84_00615 (ligA)
MMR (mismatch excision repair)
DNA ligase
AAJP84_00615 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AAJP84_00615 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
DZR_2
Motif
Other DBs
NCBI-ProteinID:
XAM19880
LinkDB
All DBs
Position
146752..148908
Genome browser
AA seq
718 aa
AA seq
DB search
MDKNAVKNLTALEAASELEWLAKEIARHDVLYNNNDQPEISDAQYDALRRRNTEIEALFP
ELIRADSPSYKIGAPVSEKFEKSVHAQAMLSLDNAFSAEDVSEFVERVRRFLRLPSTQTL
EMTAEPKIDGLSLSLRYEQGKLVRAATRGDGYTGENVTTNARTISDIPKVLQGEFPDIIE
VRGEVYIRQEDFQVLNINQQKEGKITFANPRNAAAGSLRQLDSRITASRKLKFFAYAWGE
VSEMPAKSQMEMVNKLKEYGFIVNPFTKVFEKVEDLISYYHFIEEQRQSLSYDIDGVVYK
VNDLGLQMRLGFVSRSPRWAIAHKFPAEKATALLEDIDIQVGRTGALTPVARLAPITVGG
VVVTNATLHNEDYIKGVGRNGEPIREGRDIRVGDTVIVQRAGDVIPQIVDIISSKRPKNA
VPFVFPHHCPACGSHAVREVGEAVYRCTGGLICSAQAIERIRHFVSRNAFDIEGLGKKQV
EFFFNIQDETLCIRSPVDIFTLEKRQKKALTRLENIEGFGSLSVRKLFDAINARREIPLS
RFLFALGIRHVGEVNAQRLARVYRNYTAFEAAVMAAIVPHDKADEGNEEWTDLISIEGIG
VRVGRAIIDFYQEAHNRDVLSALLQEVTPLPEEAIATDYSPIAGKIIVFTGTLMSMSRDE
AKALAERLGAKTSGSISKKTDLLIAGLGAGSKLTKAKELGVEVIDEDSWSQLIKEYYI
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
atggacaaaaatgcggttaaaaatcttactgctcttgaagcggcaagtgagttagagtgg
ttagcaaaagaaatcgcacgtcatgatgttctttataataataatgatcaacctgagatt
tctgatgcacaatatgatgctcttcgtcgtcgcaatacggaaattgaagctctatttcct
gaattaattcgtgcagattccccttcatataaaattggtgcaccagtttcagaaaaattt
gaaaaatctgttcatgcacaggcgatgctttctcttgataatgcgtttagtgctgaagat
gtcagtgaatttgttgagcgtgttcgccgttttttaagacttccatcgacacagacatta
gaaatgacggctgaaccgaagattgatggcttatctttatctttgcgttatgagcaaggg
aaacttgtgcgtgctgcaacgcgtggtgatgggtacacaggtgaaaatgtaactacaaat
gcacgaacaatttctgatattccaaaggttttacagggtgaatttcctgatattattgaa
gttcgtggtgaagtttatataagacaagaggattttcaagtcctcaatattaaccagcaa
aaagaagggaaaataacttttgcaaatcctagaaatgcagcggctggctctctacgtcag
cttgattcacggataactgctagcagaaagcttaagttttttgcttatgcttggggtgag
gtgagtgaaatgccggctaaaagccaaatggagatggtgaataagctaaaagaatatggc
tttattgttaatccatttacaaaagttttcgaaaaagtagaagatcttatctcatattat
cattttattgaagaacagcggcaatctttaagctatgatattgatggggttgtttataag
gttaatgatttagggctgcaaatgcgtttggggtttgtatctcgttcaccacgttgggca
attgcacataaatttccagcagaaaaagctacagcacttttagaagatattgatattcaa
gtaggtcgaactggagcactaacgccagttgcacgccttgcacctatcactgtaggtggg
gttgtggttactaacgcaactttgcataatgaggattatattaaaggggttggtcgtaac
ggtgaaccaatccgtgaggggcgtgatatccgtgtaggtgatacagtgattgtacagcgt
gctggtgatgtaattcctcagattgttgatattatttctagcaagcgtccaaaaaacgca
gttcctttcgtttttcctcatcattgtcctgcttgtgggagtcatgctgttcgtgaagtg
ggtgaggcagtgtatcggtgcacaggtgggcttatctgctcagcacaagcgattgagcgt
attcgtcattttgtttcacgtaatgcttttgatattgaggggcttggtaaaaaacaggtg
gaatttttctttaatattcaagatgaaacgctttgtatccgttcaccggttgatattttc
actttagagaaacgccaaaaaaaagctttaacacgtttggaaaatatagagggttttggc
agtctttctgtccgcaagctttttgatgctattaatgcacgtcgagaaattcctttaagt
cgttttttgtttgcattaggtattcgtcatgttggtgaagttaatgcacaacgtcttgca
cgtgtttatcgaaattatactgcttttgaggctgctgtgatggcagctattgtgccacat
gataaggcagatgaaggtaatgaggagtggacagacctgatcagtattgaagggattgga
gttcgtgttggtagagcaattattgatttttatcaagaagcacataaccgtgatgtgtta
tcagccttgcttcaagaagtgacacctcttcctgaggaagctattgcaacagattattcg
ccaatagcgggaaaaataattgtttttacgggaactttaatgtctatgtcgcgagatgaa
gcaaaagcattagcagagcggttaggtgctaaaacatctggttctatttctaaaaagact
gatcttcttattgcagggcttggagcggggtcaaaattgaccaaggcaaaagagttaggt
gttgaggttatcgatgaagatagctggtcccagttgattaaagagtattatatttaa
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