Buttiauxella selenatireducens: RHD99_23565
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Entry
RHD99_23565 CDS
T09954
Symbol
ligB
Name
(GenBank) NAD-dependent DNA ligase LigB
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bsel
Buttiauxella selenatireducens
Pathway
bsel03030
DNA replication
bsel03410
Base excision repair
bsel03420
Nucleotide excision repair
bsel03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bsel00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RHD99_23565 (ligB)
03410 Base excision repair
RHD99_23565 (ligB)
03420 Nucleotide excision repair
RHD99_23565 (ligB)
03430 Mismatch repair
RHD99_23565 (ligB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bsel03032
]
RHD99_23565 (ligB)
03400 DNA repair and recombination proteins [BR:
bsel03400
]
RHD99_23565 (ligB)
Enzymes [BR:
bsel01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
RHD99_23565 (ligB)
DNA replication proteins [BR:
bsel03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RHD99_23565 (ligB)
DNA repair and recombination proteins [BR:
bsel03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
RHD99_23565 (ligB)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RHD99_23565 (ligB)
MMR (mismatch excision repair)
DNA ligase
RHD99_23565 (ligB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RHD99_23565 (ligB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_OB
DNA_ligase_aden
HHH
HHH_5
DUF3701
RNA_ligase
Xre-like-HTH
HHH_8
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
WMY74342
LinkDB
All DBs
Position
complement(5130773..5132461)
Genome browser
AA seq
562 aa
AA seq
DB search
MKWITKLIGFLGLLSAMASAACPAWSSVQAQQEMVKLNEKLGKWDRSYYQQGVSEVSDAT
YDGLRRQYNEWQRCFHPSEKPQQPQIATLGKALHPIAHTGVKKLPDSEAVAQWAKGKTDL
WVQPKVDGVAVTLIYQQGHLFKLLSRGDGEKGQDWTAKAKMIPAIPKTLSGQLANSVLQG
EVFWKRDSHVQKAMGGINARGKVAGAMMSQSSPGLMSELGIFIWAWPDGPADMNMKLDML
AQAGFPLTKKWSMPVTSVDKIAMLRESWFTTPLPFVTDGIVVREAIEPAGKYWLPGKATW
VIAWKYPPAQQIAEVKDIQFTVGRTGKIAVVLRLNPLQIDDKKIKRVNIGSIKRWQVLDI
ALGDQVMVSLAGQGIPRVDEVVWRVSQRNKPQPPTDKMVTPLSCLFFEIWCREQFIARLA
WISSPEVMNINGVSLRSWQQIQQNLSLKNIFSWLTVTQEELQQISGISPARVAHLWQQFS
QVRQQPFRQWLLAFGLPLPRAVFATLPDSQWSQLVARDEHSWQKLPGIGAARAKKLVEFV
NHPQIAALVVFLAEQGIRGFAD
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
atgaagtggataacaaagcttatcgggtttctggggttgctgagcgcaatggcgtcggcg
gcgtgtccggcctggtcatcagtgcaagcccagcaggagatggtgaaattgaatgaaaag
ctcgggaagtgggaccgatcttattaccaacaaggtgtgagcgaagtcagtgatgcaacc
tatgatggcctacgtcggcaatataatgaatggcagcgatgctttcatccctctgaaaaa
ccacagcagccgcagatagctaccctgggcaaagcgttgcatccgattgctcataccggt
gtcaaaaaactgccagacagtgaagccgttgcccagtgggcaaaaggcaaaaccgatctt
tgggtacaacctaaagtcgatggtgtggcagtgaccctaatttatcagcaagggcacttg
tttaaactccttagccgcggggatggtgagaaagggcaggactggacagcaaaggccaaa
atgatccccgctatccccaagaccctttcaggccaacttgccaatagcgtgttgcaaggc
gaggttttctggaaaagagatagccacgtacagaaagcgatgggtggcattaatgcgaga
ggaaaagtggcgggagccatgatgagccaatcctccccgggcctgatgagtgaattggga
atatttatctgggcgtggccagatggtcctgctgatatgaatatgaaattagacatgctc
gctcaggctggttttccgctaaccaaaaagtggtcaatgcctgtcacctcagtggacaaa
atcgcgatgttgcgggagtcctggtttacaaccccgcttccttttgtgaccgatgggatt
gtggtgcgcgaggccatagaacctgcggggaaatattggcttccaggtaaagcaacgtgg
gtgattgcatggaaatacccgccagcccagcaaattgccgaagttaaggacattcaattt
acggtagggcgtacaggaaaaatagccgttgttctcagactgaaccccctacagatagat
gataaaaagattaaacgtgtgaacataggttcaataaaacgttggcaagttctggatatt
gcgttgggcgatcaggtgatggtaagtcttgcagggcaagggattccacgcgtcgatgaa
gtcgtatggcgtgtaagccaacgcaacaaaccgcagccccccacagataaaatggtcacc
ccgctgagttgtctgttctttgaaatttggtgtcgcgagcagtttattgctcgcctggcc
tggattagctctccagaggttatgaatatcaatggggtgagcctgcgctcctggcagcag
atccaacagaatctcagcctaaagaacattttttcctggcttacggtcactcaggaagag
ctacagcagattagcggaatttctccagccagagtggcccatctttggcagcaattctcg
caagttcgacaacaacccttcaggcagtggctgctagcgtttggtttaccgctaccccgg
gcggtgtttgccacgctgccagattcacagtggtcgcagctagttgcgcgggatgagcat
agttggcaaaaactaccgggtattggtgcagcgagggccaaaaaattggtggagtttgtg
aatcacccccaaattgctgcgctagtcgtttttctggcagagcagggaattcggggattt
gccgattag
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