Burkholderia semiarida: R0290_10305
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Entry
R0290_10305 CDS
T10421
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bser Burkholderia semiarida
Pathway
bser03030
DNA replication
bser03410
Base excision repair
bser03420
Nucleotide excision repair
bser03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bser00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
R0290_10305 (ligA)
03410 Base excision repair
R0290_10305 (ligA)
03420 Nucleotide excision repair
R0290_10305 (ligA)
03430 Mismatch repair
R0290_10305 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bser03032
]
R0290_10305 (ligA)
03400 DNA repair and recombination proteins [BR:
bser03400
]
R0290_10305 (ligA)
Enzymes [BR:
bser01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
R0290_10305 (ligA)
DNA replication proteins [BR:
bser03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
R0290_10305 (ligA)
DNA repair and recombination proteins [BR:
bser03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
R0290_10305 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
R0290_10305 (ligA)
MMR (mismatch excision repair)
DNA ligase
R0290_10305 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
R0290_10305 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
MctB
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
XCV59052
LinkDB
All DBs
Position
1:complement(2225205..2227280)
Genome browser
AA seq
691 aa
AA seq
DB search
MARTQAEPPASQPDARAAWLRDQLERANYAYYVLDQPDLPDAEYDRLFRELQQLETDHPE
LVTPDSPTQRVGGEAAGGFTPVVHDAPMLSLNNGFADEDIVAFDKRVADALAKTTDLAGS
VTDPVEYACELKFDGLAISLRYEQGVFVQAATRGDGTTGEDVTENVRTIRSIPLKLKGKH
VPAVLDVRGEVLMFKRDFARLNERQRAAEQREFANPRNAAAGSLRQLDSKITAQRPLSFF
AYGIGVLDGMPMPDTHSALLDWYESLGLPVNRERAVVHGAEGLLDFFRKVGEKRESLPYD
IDGVVYKVNRRDEQERLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARL
EPVFVGGATVTNATLHNEDEVRRKDIRIGDTVIVRRAGDVIPEVVGALLDRRPADAAEFV
MPTECPVCGSKIERLPDEAIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEKIIDQLV
ELNLVRTPADLFNLGFATLAELDRFAEKSAQNLLDSLEKAKHTTLARFIYGLGIRHVGES
TAKDLAKHFGSLTPIMDASIEELLEVNDVGPIVAESIHQFFAEEHNRTVIEQLRAPGKVT
WPEGPPAPKAPQGVLAGKTVVLTGTLPTLTRDAAKEMLEAAGAKVAGSVSKKTDYVVAGA
EAGSKLAKAEELGIPVLDEDGLHQLLEGNTP
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atggcccgaacccaagccgaaccgccagccagccagcccgacgcgcgcgccgcgtggctg
cgcgaccaactcgagcgggcgaactacgcctattacgtgctcgatcagccggatctgccc
gacgccgaatacgaccggctgttccgtgagctgcagcagctcgaaaccgaccatcccgaa
ctcgtgacgcccgattcgccgacgcagcgcgtcggcggcgaagcggctggcggcttcacg
ccggtcgtccacgatgcgccgatgctgtcgctgaacaacggcttcgccgacgaggacatc
gtcgcgttcgacaagcgcgtcgccgacgcgctcgccaagacgaccgatctcgccggctcg
gtgacggaccccgtcgaatatgcgtgcgaactgaagttcgacggcctcgcgatttcgctg
cgctacgagcagggcgtgttcgtgcaggcggcgacgcgcggcgacgggacgaccggcgag
gacgtgaccgagaacgtgcgcacgatccgctcgattccgctgaagctgaagggtaagcac
gtgccggccgtgctcgacgtgcgcggcgaggtgctgatgttcaagcgcgatttcgcgcgc
ctgaacgaacgccagcgcgcggccgagcagcgcgaattcgcgaacccgcgcaacgcggcg
gccggcagcctgcgccagctcgactcgaagatcaccgcgcagcggccgctgtcgttcttc
gcatacggaatcggcgtgctcgacgggatgccgatgcccgacacgcacagcgcgctgctc
gactggtacgagtcgctcggcctgccggtgaaccgcgagcgtgcggtcgtgcacggcgcc
gaaggcctgctggacttcttccgcaaggtcggcgagaagcgcgagtcgctgccgtacgac
atcgacggtgtcgtctacaaggtcaaccggcgcgacgagcaggagcgcctcggtttcgtg
tcgcgcgcgccgcgcttcgcgcttgcacacaagttccccgcgcaggaagcgctgacgaag
ctcgtcgcgatcgacgtgcaggtcggccgcaccggcgcgatcacgccggtcgcgcgtctc
gagccggtgttcgtcggcggcgcgaccgtgaccaacgcgacgctgcacaacgaggacgaa
gtgcgccgcaaggacatccggatcggcgacaccgtgatcgtgcgccgcgcgggcgacgtg
attccggaagtggtcggcgcgctgctcgaccggcgcccggcggatgcggccgaattcgtg
atgccgaccgaatgcccggtgtgcggctcgaagatcgagcgcctgccggacgaggcgatc
gcgcgctgtacgggcgggctgttctgcccggcgcagcgcaagcaggcgctgtggcatttc
gcgcagcgccgcgcgctcgacatcgacggcctcggcgagaagatcatcgaccagctcgtc
gagctgaatctggtgcgcacgccggccgacctgttcaatctcgggttcgcgacgctggcc
gaactcgaccggttcgccgagaaatccgcgcagaatctgctcgattcgctcgagaaggcg
aagcatacgacgctcgcgcgcttcatctacgggctcggcatccgccatgtcggcgaatcg
accgcgaaggatctcgcgaagcatttcggctcgctgacgccgatcatggatgcgtcgatc
gaggaactgctcgaagtcaacgacgtcgggccgatcgtcgccgagtcgatccaccagttc
ttcgcggaagagcacaaccggaccgtgatcgagcagttgcgcgcgccgggcaaggtcacg
tggcccgaaggcccgcccgcgccgaaggcgccgcagggcgtgctggccggcaagacggtc
gtgctgacgggtacgctgccgactctcacgcgcgatgcggcgaaggaaatgctcgaagcg
gcgggcgccaaggtggccggttcggtgtcgaagaagacggattacgtggtcgcgggcgcc
gaagccggcagcaagctcgcgaaggccgaggaactcggcatccccgtgctggacgaagac
ggtctgcaccaactcctggagggcaatacgccatga
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