Bacillus shivajii: LGQ02_03175
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Entry
LGQ02_03175 CDS
T07881
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bshi
Bacillus shivajii
Pathway
bshi03030
DNA replication
bshi03410
Base excision repair
bshi03420
Nucleotide excision repair
bshi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bshi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LGQ02_03175 (ligA)
03410 Base excision repair
LGQ02_03175 (ligA)
03420 Nucleotide excision repair
LGQ02_03175 (ligA)
03430 Mismatch repair
LGQ02_03175 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bshi03032
]
LGQ02_03175 (ligA)
03400 DNA repair and recombination proteins [BR:
bshi03400
]
LGQ02_03175 (ligA)
Enzymes [BR:
bshi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LGQ02_03175 (ligA)
DNA replication proteins [BR:
bshi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LGQ02_03175 (ligA)
DNA repair and recombination proteins [BR:
bshi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LGQ02_03175 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LGQ02_03175 (ligA)
MMR (mismatch excision repair)
DNA ligase
LGQ02_03175 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LGQ02_03175 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HHH
RNA_pol_A_CTD
HHH_8
BRCT_2
DUF7201
Motif
Other DBs
NCBI-ProteinID:
UCZ53803
LinkDB
All DBs
Position
651238..653244
Genome browser
AA seq
668 aa
AA seq
DB search
MSEQDVKIEIDRLTDLLNEYAYHYYVLDQPKVSDAEYDQLLRDLMGLEQDHPALKREDSP
SERVGGEPLDHFKKVQHDIPMLSLSNAFNEEELRDFDRRAQQGLGHTPTYSCELKIDGLA
VTLKYENGRFVQGATRGDGTTGEDITSNLKTIASIPLRLKEDVTIEVRGEAFMPKRSFDR
LNEAKEKNGEQLFANPRNAAAGSLRQLDPKIAAKRNLDIFIYSIGQVQDKEIDSHHEALQ
YVESLGFKTNDQHKHCETIEEVITYCEGWLDKRADLPYEIDGIVIKVDSLKDQEKLGFTA
KSPRWATAFKFPAEEVVTTLQDIELSIGRTGVVTPTAILDPVSVAGTTVQRASLHNEDLI
REKDLKLGDKVTIKKAGDIIPEVVNVLTEQRTGSEKDFHMPTECPECESELVRLEGEVAL
RCVNPKCPAQIREGLIHFVSRNAMNIDGLGERVITQLFSHQLVTDVADLYKLKREELLQL
ERMGEKSVDNLLTAIEASKENSLEKLLFGLGIRFVGSKAAKTLAQHFETVDKLKEATRAQ
LEDIDEIGEKMADAVVTYFEKPQVDELIDELKELGVNTTYKGPKPISQEENDSYFSGKTI
VLTGTMEELNRNDAKAEIEALGGKVTGSVSAKTDLLIAGEKAGSKLKKAEELQIEIWDEA
RLIEELKR
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atgtccgagcaagatgtgaaaattgaaattgaccgtttaacagatttactaaatgaatat
gcctatcattattatgtgttagatcagccgaaagtgtcggatgcagaatatgatcaattg
ctacgcgatttaatgggacttgaacaagaccacccagcgttaaagcgagaagactcaccg
agtgaacgtgtcggtggcgaaccgttagatcattttaaaaaagtccagcatgatattccg
atgcttagtttatcgaatgcctttaatgaagaagagttacgtgattttgaccgccgagca
cagcaagggctggggcatacaccaacatatagctgtgaactgaagattgatggtcttgca
gtgaccttgaaatatgaaaacgggcgtttcgttcaaggagcaacacgtggtgacggaacg
acgggagaagatattacgagtaatttaaagacgattgcctcgattccgctcaggttaaag
gaagacgtaacgattgaagtgcgtggagaagcgtttatgccgaaacgttcatttgatcgt
ttaaatgaagcaaaggaaaaaaacggagagcaattatttgctaatcctcgaaatgctgca
gctggttctttacgtcaactcgatccaaaaattgcagcgaagagaaatttagatattttt
atctattcaattggacaagtgcaagacaaagaaatcgactcgcaccatgaagcattgcaa
tacgtcgagtctctaggctttaaaacaaatgaccagcataagcattgtgaaacgattgaa
gaagtgatcacttactgcgaaggctggctagataaaagagcagacttgccgtatgaaatt
gatgggattgtcattaaggtagattcgcttaaggatcaagaaaaattagggtttacagcg
aagagcccgaggtgggcaactgcattcaagtttcctgcagaagaagtggtgacaactctt
caagatattgaattaagcatcggaagaacgggggttgtcacaccaacagcgatattagat
ccggtgtcagtagctggaacgaccgtacaacgtgcatcacttcataacgaagacctcatt
cgtgaaaaagatttgaagctcggtgacaaggtgacgattaagaaagcgggggacattatt
cctgaagttgttaatgttttaacagaacagcgtacaggtagtgaaaaagattttcacatg
ccaacagaatgtccggagtgcgaaagtgaactggtccgactcgaaggagaagttgccctt
cgttgtgtgaatccaaaatgtccggcacaaattcgtgaaggacttattcattttgtttcc
cgaaatgcgatgaatattgatggacttggtgagcgtgtcattacacaattgttctctcat
cagttggttacagatgttgcagacctttacaaactgaagcgcgaagaattgttacagtta
gaacgaatgggagaaaaatcagtcgataatttattaacggcgattgaggcaagcaaagaa
aattcgttggaaaaacttttatttggtctcggtattcggttcgttggttcaaaagcggca
aaaacattagcccagcacttcgaaaccgttgataaactgaaagaagcgacgcgtgcacag
ttggaagacatcgatgaaatcggggaaaaaatggcggatgcagttgttacttattttgaa
aagcctcaagtagatgaattgattgatgagctaaaagaactaggtgtcaatacaacatat
aaagggccaaaaccgatttcacaagaagagaatgattcttacttctctggcaagacaatt
gttttaactggtacgatggaagagttaaatcgtaacgacgcaaaagctgaaattgaagct
cttggtggcaaagtaacaggaagtgtcagtgcgaaaacagatcttcttatagctggggaa
aaagcaggttctaaattgaaaaaagcagaagaattgcagattgaaatttgggatgaagca
cggttaatcgaagaactaaaaagataa
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