Bacillus smithii: BSM4216_3414
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Entry
BSM4216_3414 CDS
T03984
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bsm
Bacillus smithii
Pathway
bsm03030
DNA replication
bsm03410
Base excision repair
bsm03420
Nucleotide excision repair
bsm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bsm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BSM4216_3414
03410 Base excision repair
BSM4216_3414
03420 Nucleotide excision repair
BSM4216_3414
03430 Mismatch repair
BSM4216_3414
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bsm03032
]
BSM4216_3414
03400 DNA repair and recombination proteins [BR:
bsm03400
]
BSM4216_3414
Enzymes [BR:
bsm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BSM4216_3414
DNA replication proteins [BR:
bsm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BSM4216_3414
DNA repair and recombination proteins [BR:
bsm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BSM4216_3414
NER (nucleotide excision repair)
GGR (global genome repair) factors
BSM4216_3414
MMR (mismatch excision repair)
DNA ligase
BSM4216_3414
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BSM4216_3414
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
HHH
PTCB-BRCT
Nlig-Ia
RNA_pol_A_CTD
BRCT_2
5_3_exonuc
Zn_ribbon_NUD
HHH_3
HMBD
zf-tcix
Motif
Other DBs
NCBI-ProteinID:
AKP48592
LinkDB
All DBs
Position
1:complement(2982766..2984772)
Genome browser
AA seq
668 aa
AA seq
DB search
MERHTAEKRVRELHERLNQYSYEYYVLDQPTVPDAEYDRLMQELIEIENAFPELRTPDSP
TQRVGGQPLEAFQKVRHDIPMLSLANAFGEGDLRDFDRRVRESLNEEYSYVCELKIDGLA
VSLSYENGVFVQGSTRGDGAIGEDITMNLRTIHSIPLRLKEPVSIEVRGEAFMPKKSFEK
LNREREERGETLFANPRNAAAGSLRQLDPKIAASRNLDIFLYGIGNSGNVNIQSHSEGLD
YLDRLGFKTNKERRKCKDIEEVIQYIKEYTEKRSTLPYEIDGIVIKVDSLAQQEKLGSTA
KSPRWAIAYKFPAEEVVTKLLDIELSVGRTGVVTPTAVLEPVRVAGTTVQRASLHNEDYI
REKDIKIGDEVVIKKAGDIIPEVVRPIKERRKGEEKEFHMPGHCPECGSELVRLDGEVAL
RCINPKCPAQIREGLIHFVSRNAMNIEGLGEKVIAQLFREQLVKDVADIYQLTKDQLLQL
DRMGEKSVSNLLKAIEDSKENSLERLLFGLGIRHVGAKAAKTLAVHFETLDRLMKADVEE
LTAIPEVGEKMADAVVTYFHQPEVLELIQELKEAGVNMEYKGPKPVSRDQSSSYFAGKTI
VLTGKLEALTRNEAKEKIEALGGKVSGSVSKKTDLVIAGADAGSKLAKAREFDIEIWDEE
KLLEELNK
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atggagcgacatacggcagaaaaacgagtaagagaactccatgaacgtttaaatcaatac
agctacgaatattatgtgttggatcagccgactgttccggatgcggaatatgatcggctc
atgcaagaattgatcgaaatagaaaatgcttttcctgaattgagaacgcctgattctccg
actcagcgcgtcggcggccagccgttggaagcttttcaaaaagttcgtcatgatattccg
atgctaagcttggcgaatgcgtttggagaaggcgatttgagggatttcgatcgcagagtt
cgggaatctttaaacgaagaatattcgtacgtatgcgagttgaaaatcgacggattggct
gtttccctttcctatgaaaacggagtgtttgtccaaggctctactcgcggcgatggtgca
atcggcgaagacattacgatgaacttgcgaaccatccattcgattcctctgaggttgaaa
gagccggtttcaatcgaagttcgcggcgaagcgttcatgcctaaaaaatcgtttgaaaag
ctgaatcgtgaacgggaagagagaggggaaacgctgtttgccaatcctcgcaatgccgct
gccggatcgcttcggcaactggatcccaaaatcgccgcttcccgaaatttagatattttt
ctttacggcatcggcaacagtggaaatgtcaatattcaatcccatagcgaaggattggac
tatttggacaggctcggctttaaaacgaacaaagagcggagaaaatgcaaagacattgaa
gaagtcatccaatatatcaaagaatatacggaaaaacgatcgactcttccttatgagatc
gacgggattgtgatcaaagtcgactcattagcccaacaggaaaaattggggagtaccgcc
aaaagccctcgatgggccattgcctacaaatttcctgcagaagaggtggtcactaagctt
ttagacattgaattaagcgtaggacggacaggcgttgtgacaccgactgccgttttagaa
ccggtccgtgttgccggaacaaccgtgcaaagagcttcccttcataatgaagattatatt
cgggaaaaggacatcaaaattggagacgaagtcgtcatcaaaaaagccggtgatatcatc
cctgaagtcgtgcggccgatcaaagagcgacgaaaaggggaggaaaaagagtttcacatg
cctggccattgcccggaatgcggcagcgaactggttcgtctcgatggggaagtagctctt
cgctgcatcaatccaaaatgtccggcacaaattcgtgaaggactgatccattttgtctcc
cgaaatgccatgaatattgagggacttggtgaaaaagtgattgctcaacttttccgggag
caattagtgaaagacgtagcggatatttatcaattgacgaaagatcaactgctgcaattg
gatcgaatgggtgaaaaatctgtatcgaacttattaaaagccattgaagattcgaaagaa
aactctttggaaagattattgttcggcctcggcattcgtcatgtgggggccaaagcggcg
aaaacgctggctgttcattttgaaacactggatcgattaatgaaggcagacgtggaggaa
ctgacggcgattccggaagttggggagaagatggcggacgccgttgtcacgtattttcat
caaccggaagtactggaactgattcaggagctgaaagaagcgggtgtcaatatggagtat
aaagggccgaagcctgtttccagagatcaatccagctcttattttgccggaaaaacgatc
gtgctgacaggaaaactggaagctttgacaagaaatgaagcgaaagaaaagatcgaggca
ctcggaggaaaagtttccggaagtgtcagcaaaaagacggatttagtcattgccggtgct
gatgctggctcgaaattggctaaagctcgagaattcgatattgaaatctgggatgaagag
aaactgttggaagaactaaataaataa
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