Bacillus subtilis subsp. natto BEST195: BSNT_00094
Help
Entry
BSNT_00094 CDS
T02607
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bso
Bacillus subtilis subsp. natto BEST195
Pathway
bso03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bso00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BSNT_00094 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bso03400
]
BSNT_00094 (mfd)
Enzymes [BR:
bso01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BSNT_00094 (mfd)
DNA repair and recombination proteins [BR:
bso03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BSNT_00094 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
Cas3-like_C_2
UB2H
RecG_dom3_C
AAA_14
Motif
Other DBs
NCBI-ProteinID:
BAI83502
LinkDB
All DBs
Position
60292..63825
Genome browser
AA seq
1177 aa
AA seq
DB search
MDNIQTFIKESDDFKSIINGLHEGLKEQLLAGLSGSARSVFTSALANETNKPIFLITHNL
YQAQKVTDDLTSLLEDRSVLLYPVNELISSEIAVASPELRAQRLDVINRLTNGEAPIVVA
PVAAIRRMLPPVEVWKSSQMLIQVGHDIEPDQLASRLVEVGYERSDMVSAPGEFSIRGGI
IDIYPLTSENPVRIELFDTEVDSIRSFNSDDQRSIETLTSINIGPAKELIIRPEEKARAM
EKIDSGLAASLKKLKADKQKEILHANISHDKERLSEGQTDQELVKYLSYFYEKPASLLDY
TPDNTLLILDEVSRIHEMEEQLQKEEAEFITNLLEEGKILHDIRLSFSFQKIVAEQKRPL
LYYSLFLRHVHHTSPQNIVNVSGRQMQSFHGQMNVLAGEMERFKKSNFTVVFLGANKERT
QKLSSVLADYDIEAAVTDSKKALVQGQVYIMEGELQSGFELPLMKLAVITEEELFKNRVK
KKPRKQKLTNAERIKSYSELQIGDYVVHINHGIGKYLGIETLEINGIHKDYLNIHYQGSD
KLYVPVEQIDQVQKYVGSEGKEPKLYKLGGSEWKRVKKKVETSVQDIADDLIKLYAEREA
SKGYAFSPDHEMQREFESAFPYQETEDQLRSIHEIKKDMERERPMDRLLCGDVGYGKTEV
AIRAAFKAIGDGKQVALLVPTTILAQQHYETIKERFQDYPINIGLLSRFRTRKEANETIK
GLKNGTVDIVIGTHRLLSKDVVYKDLGLLIIDEEQRFGVTHKEKIKQIKANVDVLTLTAT
PIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNGALVREAIERELARGGQVYFLYN
RVEDIERKADEISMLVPDAKVAYAHGKMTENELETVMLSFLEGESDVLVSTTIIETGVDI
PNVNTLIVFDADKMGLSQLYQLRGRVGRSNRVAYAYFTYRRDKVLTEVAEKRLQAIKEFT
ELGSGFKIAMRDLTIRGAGNLLGAQQHGFIDSVGFDLYSQMLKEAIEERKGDTAKTEQFE
TEIDVELDAYIPETYIQDGKQKIDMYKRFRSVATIEEKNELQDEMIDRFGNYPKEVEYLF
TVAEMKVYARQERVELIKQDKDAVRLTISEEASAEIDGQKLFELGNQYGRQIGLGMEGKK
LKISIQTKGRSADEWLDTVLGMLKGLKDVKKQTISST
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atggacaacattcaaacctttataaaagaaagcgatgactttaaatccatcatcaacggt
ttacacgagggcctgaaggaacagctgctcgcgggtctgtcgggttccgcgcgttctgtt
tttacttctgctctggctaatgaaacgaataagcctatctttctaatcacccataactta
tatcaagcccagaaagtaacagatgatctgacttcacttctagaggatcggtctgtcctt
ttgtaccccgtcaatgaactcatttcatcagaaatcgcagttgcaagccctgaattgcgg
gcgcagcgattagatgtcattaatagactaacgaatggagaagcgccaattgtcgttgct
ccggtagctgcaatcagaagaatgctgccgcctgtagaggtgtggaaaagcagccagatg
ctcattcaagtaggccatgatatcgaacctgaccagcttgcctcacggctggtagaggta
gggtatgagcggtctgatatggtttctgcgcccggggaattcagtattcgcggtggaatc
attgacatttatccgttgacttcagagaatccggtgagaattgaactttttgacaccgag
gtggattcaatccgcagctttaattcagatgatcagcggtcaattgagacccttacctcg
atcaatatcggtcccgcgaaggaattaattatcagaccggaagaaaaagcgcgggcgatg
gagaaaatcgatagtggtcttgccgcgagtctgaaaaaattaaaggctgacaaacaaaaa
gaaatacttcatgcgaatatttcccacgataaagaacgcttgtctgaaggccagacagat
caggagctcgtgaagtatctctcatatttctatgaaaaacctgctagtttactagattat
acacctgataatacacttctgattttggatgaagtcagtcggattcatgagatggaagaa
cagcttcaaaaagaagaagcggagtttataacaaatcttcttgaggaagggaagattttg
catgacattcgtttgtcattcagcttccaaaaaatagtggctgagcaaaaacggcctctg
ctgtactactctttatttttacggcatgtacaccatacgagcccgcaaaacatcgtcaat
gtgtcaggccggcaaatgcagagtttccatggccaaatgaacgtgcttgcgggcgaaatg
gagcgttttaaaaaatcaaatttcactgttgtgttcttaggagcaaacaaggaacgtaca
cagaaattgtcatctgttttggctgattatgatatcgaggccgccgtgacagacagcaaa
aaagcgcttgttcagggacaggtctatatcatggaaggcgagctccaatcgggatttgag
ctgccgttaatgaagcttgccgttattacggaagaagaactgttcaaaaaccgtgtaaag
aagaagccgcgaaaacagaagcttaccaatgcagagcgcatcaaaagctattctgagctt
caaattggagattatgtcgttcatattaatcacgggatcggaaaatacctggggatcgaa
actcttgaaatcaacggcattcataaagactatttaaatatacattatcagggaagtgac
aagctttacgtccctgtagaacaaattgatcaggtccaaaaatatgtcggctccgaagga
aaagagccaaagctgtataaattaggcggaagtgaatggaagcgggtcaagaaaaaagta
gagacatccgttcaggatattgctgatgacttaattaagctgtatgccgaaagagaagcg
agcaagggctatgcgttttctcctgaccatgagatgcagcgggaattcgaatcggctttc
ccttatcaagagactgaggatcagctccgttctattcacgaaatcaaaaaagacatggaa
agagaacgtccgatggaccgcttgctgtgcggagatgtgggctacggtaaaacagaggtt
gccatacgtgccgcgtttaaggcgatcggtgacggaaagcaggtagctctgctcgttccg
acaacaattttggcacagcagcactatgaaaccataaaagagcgcttccaggactatccg
attaatatcggccttctcagcaggttcagaacgagaaaagaagcaaacgaaacaatcaaa
gggctgaaaaacggaacggttgatatcgtcatcgggacgcaccggctgctatcaaaggat
gtcgtgtataaagacttagggctcctcatcattgatgaagagcagcgtttcggtgtaacc
cataaagaaaagatcaagcaaataaaagccaatgttgatgtattaacgttaacagcaacg
ccgattccgcgtacgctgcatatgtctatgcttggcgtaagggacctttcagtcatcgag
actccgccggaaaatcggttccctgtacagacgtatgttgtggaatacaacggagctctt
gtcagagaggcaattgaacgtgagcttgcacgcggaggccaggtctatttcttgtacaac
cgggtagaggacattgagcggaaagcggatgaaatttcaatgctagtccctgacgcgaag
gtagcatatgcgcatgggaaaatgacagaaaatgaattagaaaccgttatgctaagtttc
cttgaaggagaatcagacgttctcgtcagcacaaccattatcgaaactggcgtggacatc
ccgaacgtcaatacgctgatcgtatttgacgccgacaagatgggactttctcagctttac
cagctgcgggggcgtgtcggccgttctaaccgtgtggcgtatgcgtacttcacgtaccgc
cgggataaagtgctgacagaagtggctgaaaaaaggctgcaggctattaaagaattcaca
gagctaggttccggttttaaaatcgcaatgcgtgacttaacgattcgcggagccgggaat
cttcttggtgcccagcagcatggcttcatcgattcagtcggatttgacctctattcacaa
atgctgaaggaggccattgaggagcgtaaaggagacacagcgaagacagagcagtttgaa
acagaaattgatgtcgagcttgatgcgtatattccggaaacttatattcaagacggcaaa
cagaaaattgatatgtataaacgcttcaggtctgtggcgacaattgaagagaagaatgag
cttcaagatgaaatgatcgaccgctttggaaactatccaaaagaagtcgaatacttgttt
actgttgcagaaatgaaggtctatgcgagacaggaacgtgtcgagctgattaagcaggat
aaagatgctgtcagattgacgatttctgaagaagcaagtgctgaaattgacgggcagaag
ctgtttgagcttggcaatcaatatggcagacaaatcggactgggaatggaaggaaaaaaa
ctcaaaatctccatacagacgaaaggccgtagtgctgatgaatggctcgacaccgtgctg
ggcatgctgaagggcttaaaagatgtgaagaagcaaaccatttcatcaacgtaa
DBGET
integrated database retrieval system
