Bacillus subtilis subsp. natto BEST195: BSNT_06803
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Entry
BSNT_06803 CDS
T02607
Symbol
ydbR
Name
(GenBank) hypothetical protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
bso
Bacillus subtilis subsp. natto BEST195
Pathway
bso03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bso00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BSNT_06803 (ydbR)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bso03019
]
BSNT_06803 (ydbR)
03009 Ribosome biogenesis [BR:
bso03009
]
BSNT_06803 (ydbR)
Enzymes [BR:
bso01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BSNT_06803 (ydbR)
Messenger RNA biogenesis [BR:
bso03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BSNT_06803 (ydbR)
Ribosome biogenesis [BR:
bso03009
]
Prokaryotic type
rRNA helicases
BSNT_06803 (ydbR)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_RecD
CMS1
Motif
Other DBs
NCBI-ProteinID:
BAI83942
UniProt:
D4G5D6
LinkDB
All DBs
Position
501891..503333
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AA seq
480 aa
AA seq
DB search
MKAINRMGFEEATPIQAQTIPLGLSNKDVIGQAQTGTGKTAAFGIPLVEKINPESPNIQA
IVIAPTRELAIQVSEELYKIGQDKRAKVLPIYGGQDIGRQIRALKKNPNIIVGTPGRLLD
HINRRTIRLNNVNTVVMDEADEMLNMGFIDDIESILSNVPSEHQTLLFSATMPAPIKRIA
ERFMTEPEHVKVKAKEMTVSNIQQFYLEVQERKKFDTLTRLLDIQSPELAIVFGRTKRRV
DELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLVATDVAARGLDISGVTHVY
NFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKSMLRAIEQTTKRKMDRMKEPTLDE
ALEGQQQVTVERLRTTISENNLNFYMTAAAELLEDHDAVTVVAAAIKMATKEPDDTPVRL
TDEAPMVSKRYKNQRSSKRRDGQGGGYRGGKGKSNNRSSYDKKRSNDRRSSGDRRQKKSY
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcaattaatcgtatgggatttgaagaagcaacaccgattcaggcacaaacgata
ccgctcggactttcaaataaagacgtcattggacaagcgcaaacaggtacaggtaaaaca
gctgcgtttggtataccccttgttgaaaaaattaaccccgagtctcctaatattcaagca
atcgtaatcgcgccaacccgtgaattagccattcaagtatctgaagaattgtataaaatc
ggacaagataaacgtgcgaaggttcttcctatttacggcggacaggatattggacggcaa
atccgggcgttaaagaagaatccgaatattattgtcggaacacctggacgtcttcttgac
cacatcaatcgccgcaccattcgtttaaacaatgtaaatactgttgtaatggatgaagcg
gatgaaatgctgaacatgggattcattgatgatattgaatctatcctttcaaacgtgcca
agcgagcatcagacacttctgttctctgccacaatgcctgcgccgatcaaacgcattgca
gagcgctttatgactgagccggaacacgtaaaagtaaaagcgaaagaaatgacggtttct
aacattcagcagttctatttggaagtgcaagaacgcaaaaaattcgatacactgactcgt
cttcttgacattcagtctcctgagcttgcgatcgtattcggacgtacaaaacgccgtgtc
gatgaactggctgaagccctgaaccttcgcggatatgcagctgaaggaattcacggtgac
ttaacgcaggcgaaacgtatggttgcgcttcgtaaatttaaagaaggcgcaatcgaagtt
cttgtcgcaactgatgttgccgctcgcggacttgatatctcaggtgttacacacgtatac
aacttcgacgtgcctcaagatcctgaaagctacgttcaccgtatcggaagaacgggccgt
gcaggaaaaacaggtatggcgatgacgttcattacaccgcgtgagaaaagcatgcttcgc
gcaattgaacaaacaacaaaacgcaaaatggaccgcatgaaggagcctacacttgatgaa
gcgttagaaggccagcaacaggttactgttgaacgtcttcgcacaacaatcagtgaaaac
aacctgaacttctacatgacagcggcagctgagctgcttgaagatcatgatgcagtaaca
gtggttgcggcggctatcaaaatggctactaaagagccagacgacacaccggttcgctta
acagacgaagcgccgatggtcagcaaacgctacaagaaccagcgctcttctaaacgcaga
gacggtcaaggcggcggctaccgcggcggaaaagggaaaagcaacaaccgttcttcctat
gacaaaaagcgttcaaacgatcgccgttcttcaggtgacagacgccagaaaaaatcttac
taa
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