Baekduia soli: FSW04_23590
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Entry
FSW04_23590 CDS
T06127
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bsol
Baekduia soli
Pathway
bsol03030
DNA replication
bsol03410
Base excision repair
bsol03420
Nucleotide excision repair
bsol03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bsol00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FSW04_23590 (ligA)
03410 Base excision repair
FSW04_23590 (ligA)
03420 Nucleotide excision repair
FSW04_23590 (ligA)
03430 Mismatch repair
FSW04_23590 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bsol03032
]
FSW04_23590 (ligA)
03400 DNA repair and recombination proteins [BR:
bsol03400
]
FSW04_23590 (ligA)
Enzymes [BR:
bsol01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FSW04_23590 (ligA)
DNA replication proteins [BR:
bsol03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FSW04_23590 (ligA)
DNA repair and recombination proteins [BR:
bsol03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FSW04_23590 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FSW04_23590 (ligA)
MMR (mismatch excision repair)
DNA ligase
FSW04_23590 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FSW04_23590 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_5
HHH_2
BRCT
HHH
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
RecR_HhH
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
QEC50269
UniProt:
A0A5B8UAN2
LinkDB
All DBs
Position
complement(4859106..4861142)
Genome browser
AA seq
678 aa
AA seq
DB search
MTAPAASARRAEELRALLRHHAERYYVLDDPEIGDDAYDALLDELRGLEAEHPELLTPDS
PTQRVGGTPVSSLEKVTHLLPMLSLANARSEEELRAWVGRMRNHLAREGIDDPRFEYVCE
PKIDGLAISLLYRDGILERGATRGNGEVGEDVTHNLRTIPSIPARIAVADGEDPPALLEV
RGEVYMSLPDFQALNERRAEAGESTFMNPRNAAAGTIRQLDPRLAAQRPLSMWCYGVGAM
EGARFTSHWDSLRWLEAHGFRVNGDVVRLGGEDEAVARCLAWQERRGGLDFEIDGVVVKV
DDVELQRRLGVVGRDPRWAIAWKFPPTTAVTTLRNVLWNVGKFGDLHPFAELEPVHVGGV
TVKMATLHNEEDLARKDVRPGDEVIVLRAGDVIPQVVSPAPHAAERADRAPVPRPPARCP
VCDTPTVKPEGAVFTRCPNVVCPGRQWQLLKHFASQGAMDIDGLGEKQVAALQEAGLVRT
AADFYRLTPEALEALEGVGEVSARRLVDAIAASRDRPFGRVLFAIGLEEVGFVTGRSLAQ
QFRTIDALLAATPDEIQQTPGVGPIMARRIADQLADEDRRALIADLRAQGLRFEEDGPPP
GEGPLSGRTLVLTGTLPDLTREQATERITAAGGRVTSSVSKKTDYVVAGESPGSKLEKAE
RLGVAVLDEAGLLGLLEP
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
gtgacggcgccggcggcctcggcgcggcgcgccgaggagctgcgcgcgctgctgcgccac
cacgccgagcgctactacgtgctcgacgaccccgagatcggcgacgacgcctacgacgcc
ctcctcgacgagctgcgcgggctcgaggccgagcaccccgagctgctcacccccgactcg
ccgacccagcgcgtcggcggcacgccggtctccagcctggagaaggtcacccacctgctg
ccgatgctctcgctggccaacgcccgcagcgaggaggagctgcgtgcgtgggtgggccgc
atgcgcaaccacctcgcccgcgagggcatcgacgacccgcggttcgagtatgtctgcgag
cccaagatcgacgggctggcgatctcgctcctgtaccgcgacgggatcctggagcgcggg
gcgacacgcggcaacggcgaggtcggcgaggacgtcacccacaacctgcggacgatcccg
tccatcccggcgcgcatcgcggtcgccgacggcgaggacccgcccgcgctgctggaggtc
cgcggcgaggtctacatgtcgctgcccgacttccaggcgctcaacgagcgccgcgccgag
gccggggagtcgacgttcatgaacccgcgcaacgccgcggccgggacgatccgccagctc
gacccgcggctcgcggcgcagcgcccgttgtccatgtggtgctacggcgtcggtgccatg
gagggcgcgcgcttcacgagccactgggacagcctgcgctggctcgaggcccacggcttc
cgcgtcaacggcgacgtggtgcgcctcggcggcgaggacgaggccgtcgcccgctgcctg
gcgtggcaggagcgccgcggcggcctggacttcgagatcgacggcgtcgtcgtcaaggtc
gacgacgtcgagctgcagcgccggctgggcgtggtggggcgcgacccgcgctgggcgatc
gcgtggaagttcccgccgacgaccgcggtcacgacgctgcgcaacgtcctgtggaacgtc
gggaagttcggcgacctgcacccgttcgccgagctcgagcccgtccacgtcggcggggtg
acggtgaagatggccacgctgcacaacgaggaggacctcgcgcgcaaggacgtgcgcccc
ggcgacgaggtcatcgtcctgcgggcgggcgacgtcatcccgcaggtcgtctcgccggcc
ccgcacgccgccgagcgcgccgatcgcgcgcccgtcccgcgcccgccggcgcgctgcccg
gtctgcgacacgccgacggtcaagcccgagggcgcggtcttcacccgctgcccgaacgtc
gtctgccccgggcgccagtggcagctgctcaagcacttcgcctcccagggtgcgatggac
atcgacgggctgggcgagaagcaggtcgccgccctgcaggaggcggggctcgtgcgcacc
gccgccgacttctaccgcctgacccccgaggcgctggaggcgctggagggcgtcggggag
gtctccgcacggcgcctggtcgacgcgatcgccgcctcccgcgaccgcccgttcggccgc
gtcctgttcgcgatcggcctcgaggaggtcggcttcgtcaccgggcgcagcctggcccag
cagttccgcacgatcgacgcgctcctggccgcgacgcccgacgagatccagcagaccccg
ggtgtcggcccgatcatggcccggcgcatcgccgaccagctcgccgacgaggaccggcgc
gcgctcatcgccgacctgcgggcccaggggctgcggttcgaggaggacggcccgccgccg
ggggaggggccgctgagcgggcgcacgctcgtgctgaccggcacgctgcccgacctgacg
cgcgagcaggccaccgagcggatcacggccgccggcggccgggtcacgagctcggtgtcc
aagaagaccgactacgtcgtggccggcgagtcgccgggctccaagctcgagaaggccgag
cgcctcggggtggcggtcctcgacgaggccggcctgctggggctgctggagccatga
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