Betta splendens (Siamese fighting fish): 114853022
Help
Entry
114853022 CDS
T08231
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1-like isoform X1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
bspl
Betta splendens (Siamese fighting fish)
Brite
KEGG Orthology (KO) [BR:
bspl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
bspl03036
]
114853022
03400 DNA repair and recombination proteins [BR:
bspl03400
]
114853022
Chromosome and associated proteins [BR:
bspl03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
114853022
DNA repair and recombination proteins [BR:
bspl03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
114853022
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMCHD1_S5
HATPase_c_3
SMC_hinge
HATPase_c
YnfE
Caudo_bapla_RBP_neck
Motif
Other DBs
NCBI-GeneID:
114853022
NCBI-ProteinID:
XP_029001668
UniProt:
A0A6P7M684
LinkDB
All DBs
Position
4:19522219..19546913
Genome browser
AA seq
1948 aa
AA seq
DB search
MEEGRSNKRILVYDFRNEKDFKKTLIKTSGLDYNDFRQELHKEFAIPSYETFVVMTTDRT
VIDFDKYGKLQDGITLYLLQRKEQALPVAVEEKIKFMPHYDTLIRAGLYEYYASEGQNPL
PYALAELVDNSLSATAKIKGTRTIEIRLMFDESLGKPAVIVLDNGCGMTPQQLNNWAVYR
LSKFTRENSTFASLQEKYVRPEPVPRSLNSDISYFGVGGKQAAFYIGTSTRMISKSAGSP
DVHELLLSKDDFERKEKNKEDIYSTTIKNRKLCDSSHVEKKDERFLHGLIAEEKGNESFT
AVVITGVQAEHVKYLTQDFKDWTRRLAHIYHYYIHGVNGNYIRSSPTNSDLTNIDIQVTL
REKSPKVPRVINLTEVEDDLQTLYINTAAETFEFKASIESDGGTVEGILRYHPFFDDRET
YPKESSSLQAADSDDEDDVDDEPGARARGKRPVFECFWNGRLIPYTKIDILDWCTRPKGG
DVPPECYSRFSGVLFTDDRFEVSTNKLTFTDLELKLRKKGTIFTCVVNEKKPQRANIQSK
FTEWLKKCHTNFDKQVKFLGFKGVLSREDVQVKKRQHPWSTFTKIACGNNIYKAGQLIKS
KNTSPVYCGKVIRFLVYGEYKEGDFATGGQVELALEPKGLYDKTKIIPISKIDTLATNDS
IQKNIDSNSAKLPDTLKVEWPDENAWSQNDVHPAGAQLGPLKIEILDKKGDILTSMPALG
KPGGIKLNVRLVLYHGPVEVVTFTASHLQNRSFWFKKNENLTKLGKYTLILNAVVNDKTN
YGGRELPSYTLDFSLEASAAHSFDIDALSPSFKVGVPFDLPLKIKDIYGNAAKPPPDVEP
VLKSSDLVVTYESIKNTENSFIIKNVRARGRIQQTKTYNLSVTLPGLKRETKTVKFSLNP
GPSQSLHVTPDDSPITVENGNPVRFNVEIHDEAGNITACPKHVVHCQGNGLPPVKLDCSR
TGAAQLETKPIKLTIINGEPQMLEVQLNIPSQKDIKTVTRELMVVPSTRVSVMKLYSEND
ENLVLRNNEKIEWLAGGLLENLVYKLYDEAGREVPLTSEIASMIKVNWTGDLVLEDLLVG
KLPDLQVHKQVEEERFYQVSYQDQSVSVSFTITPRPDEPARLKATIPQNGVKLGETLSTN
INLELVDQYGNATKTLDSTCVNSMTVKAEDLDQSAVTFIWQESTRSVHVAGVCFKGGTPG
PRELCFTYASYVDSAIVTVMAGDPAELKLVSGPDQPLQVINDHGIPKPFLVQLVDKWGNP
SSDQRVVVKVKLSPPTLKVTTTVTSQPVDTEGKASFTVTSVSGTKGYYQLNFTGSLNMKP
VPGPSVNLIVLPNPKKAVSLSVEYDTGATFPAGGNFTLFSVTVVSDEGAPMTTFSPAAVS
MRIWSGVSSEGPLLFEFKCNKPLENERKDCFHFRDKEVPEQVGKYSIKFHLNNNTTVLES
KQIIINVVANQPVRLGPDSNPQHPVVSFSKDIANRTLVQNMTLRIMDAYGNPAGQDLDGT
VVVSIKNYNGESEKNLLFEDRSNTQCLKLEEGKVHIPRLAIMEDCPGEDGRAYTLLFKPE
VPVVSQALEPFELPFHFYNDEANQMKMCELSKKKEELTSAVSKYSGFFNESEQLLQLLTA
RQNEANRKMSGIKQVLDTKKMKIAQASSIRDIDRFINEKRAEAERILQMSRRTFSVSDPF
RGQQGVLGMVGRLAYVEDDAAAHMISWNLRGYMDCVITTTTESAMRIHRDTQGRQKVMAL
ESIFVHQGSRPLPHIRNHCNVFDPPGNPVFARELLIFPHYTQECDIVFKNILGDTILIDD
LASANQYRKQVVQNKTPCPTILTRQGDLVSAKGMFGGSQNKAPPIHTLQVFGSPPPQNYY
AVIEQIDLAYQYQVAMEKHLKAAKEYEEHVTVMNSPDTLKKKEDMEAKRRQLEMIEGQLA
STPERRGKRECQDPGEPSGIDTKRQRRT
NT seq
5847 nt
NT seq
+upstream
nt +downstream
nt
atggaggaaggaagaagcaataaacggatcctggtttatgactttcgcaatgaaaaggat
tttaagaagacgctgattaaaacaagtgggttggactataatgactttcgtcaggaactg
cataaggaatttgcaatcccctcatatgaaacatttgtggtgatgacaactgacagaaca
gtcattgattttgataaatatgggaagcttcaggatggcatcactctgtacttgctgcaa
aggaaggagcaagcactgccagtggctgtggaggaaaagatcaagtttatgcctcattac
gatacgttgatccgggctggcttgtatgagtactatgctagtgagggtcagaatccttta
ccctatgcacttgctgagctggtagacaactctctgtcagcaacagctaaaatcaaagga
acaaggacaatagagataagactgatgtttgatgaaagtcttgggaaacctgcagtgatt
gtcttggataacggctgtggaatgacccctcagcagctcaataactgggcagtttacaga
ctctctaaatttacgagagaaaacagcacatttgctagtcttcaagagaagtatgtccgg
cctgaaccggttcctcgtagtctcaacagtgatatatcttactttggagttgggggaaaa
caagctgctttctacattggaacctcaactaggatgatcagcaaatctgcaggctcccca
gatgttcatgagctgcttctgtctaaagatgattttgagagaaaagaaaagaacaaagag
gacatatacagcaccaccatcaagaacagaaagctttgtgactcttcccatgtggaaaaa
aaagatgaacgctttctccatggacttattgctgaggaaaaggggaacgaaagcttcaca
gctgtggtcattacaggcgttcaagctgaacatgtaaaatatctgacgcaagactttaag
gattggaccagacggctggcccacatctatcattattacatacatggagtcaatggaaat
tacataagaagtagccccacgaactcagacctcactaatattgacattcaggttacttta
agagaaaagtctcccaaagtccctcgtgtcataaatctcacggaagtggaagacgacctg
cagactctctacataaatactgctgcagaaacgtttgagtttaaggcctccattgaatca
gatggtggcacagtggagggaatccttcgatatcatcctttttttgatgatagagagact
tatcctaaagaatcatcttcacttcaagcagccgacagtgatgacgaagatgatgtagat
gatgagcctggggcacgggcaagaggaaagaggccagtgtttgaatgcttctggaatgga
cgcctcataccttacaccaaaatagacattttggactggtgcacacgccccaaaggagga
gatgtgcctccagagtgctacagccggttttcaggggtgctttttactgatgacagattt
gaggtcagcacaaacaaactcacattcaccgacctggagctgaaactgagaaaaaagggc
accatctttacatgtgttgttaatgaaaagaaaccacaaagagctaacattcagagtaag
ttcacagagtggcttaaaaaatgtcacacgaactttgacaagcaagtgaaatttttgggc
ttcaagggtgtgttaagccgagaggatgttcaggttaagaagagacagcatccttggtca
acgttcaccaaaattgcatgcggcaacaacatatataaagctggccagctgataaagtct
aagaacacatcgcctgtttactgcggtaaagtgattcggttcttggtgtatggagagtac
aaggaaggtgactttgccacaggtggacaggttgaactggctctggaacccaaaggactt
tatgacaagaccaagatcatacctatttccaagatcgacacattggccactaatgacagt
atccagaagaacattgacagtaactcagccaagcttccagatacgctgaaggtggagtgg
cccgatgaaaacgcctggtcacagaacgatgttcatccagctggagctcagttaggacca
ctcaaaatagaaattctggacaagaagggggacattctgaccagcatgccagcactgggg
aaacctggagggataaaactaaatgttaggctagtattgtatcatggacctgtagaggtt
gtcactttcactgccagccatttacaaaaccggtcattctggttcaaaaaaaatgagaat
ctgactaaactggggaagtatacactgattctaaacgcagtggtaaatgacaaaacaaac
tatggtggaagagaacttccaagctacaccctcgatttctccttagaagcgagtgctgca
cacagttttgacattgatgcactaagcccttcttttaaggtaggggtgcctttcgacctt
cctctgaaaataaaagacatttatggcaacgcagcaaaacctcctcccgatgtcgagcct
gtacttaaatccagtgatctggttgtcacatacgagtcaataaagaacacagagaactcg
ttcattatcaaaaatgtcagagcaagaggaagaatccagcaaacaaagacatataacctg
agtgtgaccctgcctggtcttaaaagagagaccaaaacagtgaaatttagtcttaatcct
gggccttcacagtccctccatgtgactccagatgacagcccaatcactgtagagaacgga
aatcctgtcaggtttaatgttgaaattcacgatgaggccggaaacatcaccgcttgccct
aaacacgttgttcactgtcagggtaatggccttccaccagttaaactcgactgcagcaga
acgggagctgcacagctagaaacaaaacccataaagttaacaattatcaatggagaaccg
caaatgcttgaagttcaactaaacattcctagtcagaaagacataaaaacagtcacgagg
gagctgatggtggttcctagcaccagagtgtctgtgatgaagctgtacagtgagaatgat
gagaatctggtcctcaggaacaatgaaaagatagagtggctggctggaggcttgctggag
aacctggtctataaactgtacgatgaggctggaagagaagttcctctcacctctgaaatc
gcttccatgatcaaggtcaactggacaggagatttagttttggaagatttgctcgtgggg
aagctgcctgatttgcaggttcacaagcaggtggaggaagaacgtttctaccaggtgtca
taccaagaccagagcgtgtctgtctcctttactataacgccacgacctgatgaaccagca
cggctaaaagcaactattccccaaaacggagtaaagcttggtgaaaccctgtctacaaat
atcaacttggagcttgtggatcagtatggtaatgcaacaaagacactggactcaacttgt
gtaaacagcatgactgtgaaagcggaggatctggaccaatcagccgtcacctttatatgg
caggagagcactcgctctgtccatgtggctggagtgtgtttcaagggtgggactcctggt
cccagagagctgtgcttcacctatgccagctatgtggactctgccatagtcacagtgatg
gctggagatcctgcagagcttaaactagtcagcgggccagatcagcctttgcaggtgata
aatgaccacggcatccctaaacctttcttggtccaactggtcgacaagtgggggaacccg
tcatcagaccagagggttgtagtgaaagtgaagctgtcacctccaacactaaaggtaaca
acaactgtgacttcacagccggtggatacagaaggaaaagcctccttcactgtaactagt
gtgagcggaacaaaggggtactatcagctgaacttcacaggttcactcaacatgaaaccg
gttcctggtccatcagtgaatctcattgtcttacccaatcccaagaaagctgtgagtctg
tcagtggagtacgacaccggtgccacgtttcctgctggaggcaacttcacattgttctca
gtgaccgtggtgtctgatgaaggtgctccaatgactacatttagccctgctgctgtttcc
atgcggatttggagtggagtgtcttcagaaggacctctactctttgaattcaaatgtaac
aagcccctggagaatgagaggaaagactgttttcacttcagagataaagaggttccagaa
caagttggaaagtactccatcaaattccatcttaataataatacaacagttttagaaagt
aaacagattattatcaatgtggtggccaatcagcctgtcagactgggacctgactccaat
ccacaacatcctgttgtttccttcagtaaggacattgcaaaccgaaccttggtacagaat
atgactctgaggataatggatgcttatggaaacccagcagggcaggacctggatgggact
gtggttgtttctattaagaactacaatggtgaaagtgaaaagaaccttctgtttgaagac
aggagtaacacacagtgtcttaaactggaagaggggaaggtccatatccctaggctggcc
atcatggaggattgccctggggaggatggcagagcatacaccctcctcttcaaacctgaa
gtgccagtggtttcccaggctctggaaccttttgagctgccttttcatttttacaacgat
gaagctaatcaaatgaaaatgtgtgagctgtctaagaagaaggaggagctcacttctgct
gtctctaaatattcaggcttctttaatgaaagtgaacaactcctccaactgctcacagcg
agacagaatgaggcaaatagaaaaatgtctggaattaaacaagtcctggacacaaagaaa
atgaaaatagctcaagcttccagtatcagagatatcgacagattcataaacgagaagagg
gcggaagctgaaagaattctgcaaatgtctcgacgaaccttttctgtttctgaccccttc
agggggcagcagggtgtgctaggaatggttgggcgtctggcctacgtggaggatgatgct
gctgcacacatgatctcctggaaccttagaggttacatggattgtgtcatcaccacaact
actgaatcagcaatgcgaattcatagagacactcaaggcaggcagaaggttatggccctg
gaaagcatatttgtgcatcaaggctccaggccgctgccacacatcaggaaccactgtaat
gtctttgatccccctgggaaccccgtgtttgccagagagcttctgattttccctcactac
acacaggagtgtgacattgtgtttaaaaatattcttggtgacactattctgatcgacgac
ctggcgtctgcaaaccagtacagaaagcaggttgtgcagaacaagacaccgtgccccacc
atactgaccaggcaaggggacctggtcagcgctaagggaatgtttggaggttcacagaac
aaagctccaccgatccacacattacaagtgtttggatcccctcctccacagaattactac
gctgttatagagcaaatagacctggcatatcagtaccaggtggctatggagaagcatttg
aaggcagcaaaggagtatgaagaacatgtaacagtgatgaattctcctgatacgctgaaa
aagaaggaagatatggaggcgaaaaggagacaactggagatgattgagggccaacttgct
tctactcctgaaagacgaggaaaacgagagtgtcaggatcctggggagccttctggcatt
gacacaaaaaggcagagacgcacataa
DBGET
integrated database retrieval system
