Brevibacterium spongiae: L1F31_12640
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Entry
L1F31_12640 CDS
T09030
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bspo
Brevibacterium spongiae
Pathway
bspo03030
DNA replication
bspo03410
Base excision repair
bspo03420
Nucleotide excision repair
bspo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bspo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
L1F31_12640 (ligA)
03410 Base excision repair
L1F31_12640 (ligA)
03420 Nucleotide excision repair
L1F31_12640 (ligA)
03430 Mismatch repair
L1F31_12640 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bspo03032
]
L1F31_12640 (ligA)
03400 DNA repair and recombination proteins [BR:
bspo03400
]
L1F31_12640 (ligA)
Enzymes [BR:
bspo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
L1F31_12640 (ligA)
DNA replication proteins [BR:
bspo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
L1F31_12640 (ligA)
DNA repair and recombination proteins [BR:
bspo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
L1F31_12640 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
L1F31_12640 (ligA)
MMR (mismatch excision repair)
DNA ligase
L1F31_12640 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
L1F31_12640 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
Nlig-Ia
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
DNA_pol_lambd_f
RNA_lig_T4_1
Motif
Other DBs
NCBI-ProteinID:
UVI34966
UniProt:
A0ABY5SPA0
LinkDB
All DBs
Position
complement(2821825..2823993)
Genome browser
AA seq
722 aa
AA seq
DB search
MTTTPENADLSDASTRLQAHAQLTERIEELRAAYYQDSLLVSDAEYDELVHRLEDLEAKF
PELVTDSSPTQTVGGVVDTSTFDPVEHIGPMYSLDNVFDYDELRAWYERVRSATSAKSKF
LCELKIDGLAVNLLYRNGELVRAATRGDGRIGEDITANVRTISDIPHHLDTEHPPAEVEI
RGEVFFPVEEFAELNASLVAEGKAPFANPRNSAAGSLRQKDPAVTARRPLHMLVHGIAVW
TPADDSHPEPAHQSEVYEQFRSWGLPISDYFKVLDTVDEIEDFIAHYGEHRHDVTHEIDG
IVIKIDDIAVQETLGYTSRAPRWATAFKYPPEEVTTKLIDIQVQVGRTGRVTPFAVMEPV
TVAGSTVERATLHNGYEVKRKGVLIGDTVTLRKAGDVIPEVLGPVVAQRDGSEHEFVMPT
HCPSCGTELGEQKEGDKDLRCPNSRSCPAQLANRIFYLASRAAFDIEALGEEAAIALTAP
AEPETPPLTSEAFLFDLTPEALADVKIWRDKKVKGVATGERELVPYFYTRGTAKKPSAPS
ANTKKLFDELEKAKDQDLWRVLLALSIRHVGPTAARTLAAKFRTLQAIREAGEEELSDVE
GIGPTIAKSLRDWFDVDWHNEIVDTWAAAGVRMEDEEVETGAQTLEGLTIVATGSLSTFT
RDGIKEAILGAGGKAAGSVSKKTDYVVAGENAGSKLEKAESLGVPVLDEDQFRVLLETGS
LD
NT seq
2169 nt
NT seq
+upstream
nt +downstream
nt
atgaccacgacaccggagaacgcagatctctcggatgcgtccacccgcttacaggcccac
gcacagctgaccgagaggatcgaggagctgcgggccgcctactaccaggactccctgctc
gtctccgatgccgaatacgacgagctcgtccaccggctcgaagacctcgaggcgaagttt
cccgaactcgtcacggactcctcaccgacgcagacggtcggcggtgtcgtcgacacctcg
accttcgacccggtcgaacacatcgggccgatgtacagccttgacaacgtcttcgactat
gacgaactgcgggcttggtatgaacgggtccggtcagccacctcggcgaagtcgaagttc
ctctgcgaactgaagatcgacggactcgccgtcaatctgctctaccgaaacggcgaactg
gtccgggccgcgacccgcggagacgggcgcatcggtgaggacatcaccgcgaacgtgcgc
accatctccgatatcccgcaccacctcgatacggagcacccgccggccgaggtggagatc
cgcggtgaggtgttcttccccgtcgaggagttcgccgaactcaacgcctccctcgtcgcc
gagggcaaggcgccgtttgcgaacccgcggaactctgcggcaggctccctgcggcagaag
gacccggcagtcaccgcacgccggcccctgcacatgctcgtccacggcatcgcggtgtgg
accccggctgatgattcgcacccggaaccggcccaccagtccgaggtctacgaacagttc
cggtcctggggtctgccgatcagcgactacttcaaggtcctcgacaccgtcgacgagatc
gaagacttcatcgcccactacggcgagcaccgacacgacgtgacgcatgagatcgacggc
atcgtcatcaagatcgacgacatcgccgtgcaggagactctcggctacacctcccgtgcg
ccgcggtgggcgacggccttcaagtatccgcccgaggaggtcacgacgaagctgatcgac
atccaggtgcaggtcggccggaccggacgagtgacccccttcgccgtgatggagccggtg
accgtggccggatcgaccgtggagcgggcgaccctgcacaacggctacgaggtcaaacgc
aagggtgtgctcatcggcgacaccgtcaccctgcgcaaggccggcgacgtcatccccgag
gtgctcggaccggtcgtggcccaacgtgacgggtccgaacacgaattcgtcatgcccacc
cactgcccgtcgtgcgggaccgaactcggggagcagaaggaaggcgataaggatctgcgg
tgcccgaactcgcggtcgtgcccggcacagctggccaaccgcatcttctatctcgcctcc
cgagccgccttcgacatcgaggctctcggtgaagaggccgcaatcgcactcacggccccg
gccgagcccgagacgccaccgctgacctcggaggccttcctcttcgacctcaccccggaa
gctctcgcggatgtgaagatctggcgggacaagaaggtcaagggcgtggcaaccggggag
cgggagctcgtgccctacttctatacgcgcgggaccgcgaagaagccgagcgctccgagc
gcgaacacgaagaagctcttcgacgaactggagaaggccaaggaccaggatctgtggcgg
gtgctcctggccctgtcgatccgtcacgtcggaccgacggcggcgcggactctggccgcg
aagttccgtacgcttcaggccatccgtgaggccggcgaagaggagctctcggatgtcgaa
ggcatcgggccgacgatcgcaaagagcctgcgcgactggttcgacgtcgactggcacaac
gagatcgtcgacacctgggcggccgccggcgtacggatggaggacgaggaagtcgagacg
ggtgcgcagactctcgaggggctgacgatcgtggccacaggatcgctgagcactttcacc
cgcgacgggatcaaggaggcgatcctcggcgccggaggcaaagcggcgggctctgtgtcg
aagaagaccgattacgtcgtcgccggtgagaacgccggatcgaagctggagaaggccgaa
tcactgggcgtgccggtgctcgatgaggaccagttcagggtcctgttggagacgggaagc
ctcgactga
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integrated database retrieval system
