Brevundimonas staleyi: ACETK8_13595
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Entry
ACETK8_13595 CDS
T10734
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bsta Brevundimonas staleyi
Pathway
bsta03030
DNA replication
bsta03410
Base excision repair
bsta03420
Nucleotide excision repair
bsta03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bsta00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ACETK8_13595 (ligA)
03410 Base excision repair
ACETK8_13595 (ligA)
03420 Nucleotide excision repair
ACETK8_13595 (ligA)
03430 Mismatch repair
ACETK8_13595 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bsta03032
]
ACETK8_13595 (ligA)
03400 DNA repair and recombination proteins [BR:
bsta03400
]
ACETK8_13595 (ligA)
Enzymes [BR:
bsta01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ACETK8_13595 (ligA)
DNA replication proteins [BR:
bsta03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ACETK8_13595 (ligA)
DNA repair and recombination proteins [BR:
bsta03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ACETK8_13595 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ACETK8_13595 (ligA)
MMR (mismatch excision repair)
DNA ligase
ACETK8_13595 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ACETK8_13595 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
DNA_ligase_ZBD
PTCB-BRCT
HHH
DZR_2
Motif
Other DBs
NCBI-ProteinID:
XGJ07096
LinkDB
All DBs
Position
2657738..2660056
Genome browser
AA seq
772 aa
AA seq
DB search
MAEPSIESLSEAEAADELARLAAEMARHDALYAEAAPEITDADYDALRARNLAIETRFPA
LVREDSPSRKVGAPVSSQFAEVRHGVPMLSLDNAFDDGDVTDFVARIRRFLNLPADERIA
FVAEPKIDGLSANIRYENGVLVQGATRGDGRAGEDITANLKTLKDIPQKLSGSGWPALIE
VRGEVYAPNEEFAAFNAEAEAAGRRTYANPRNFAAGSLRQIDPSVTAGRPLRFFAYAWGE
SSEPFAETQGQALEKFNAWGFPVNPRSTRVEGAEGLVGIYHGLETDRAGLGYDIDGVVYK
VDRLDWQSRLGFVSRSPRWAIAHKFPAQQATTVLEGIDIQVGRTGSLTPVARLAPVTVGG
VVVRNATLHNEDEIARKDVRIGDTVVLQRAGDVIPQIVSVVADKRPADAMPYLFPTHCPV
CGSEAVRPEGEVRRRCTGGLICAAQLVERLKHFVSRRAFDIEGLGEKQLIAFHERGWIHE
PADIFRLARDTEKLDDLRAEDGYGETSVKNLVAGIDARRTIALERLLFGLGIRDIGDQTS
LLLARHFGDWKAFHAAALEAASGIPSPEWTQLAEGHGVSARTLSVMAAAELSSDDPWPEA
PLDQKLAFAFPGVAAPARRALAELTTDWPSILELARIAREDGPSATLGEIAGISGVGPVA
ARAVAEFFHEPHNQTVVTNLIDQLDVIEDAERPKSDTQVAGKTVVFTGALERFTRDEAKA
RAESLGAKVSGSVSKKTDYLVAGPGAGSKLADAQKHGVAVLTEDEWLALIGG
NT seq
2319 nt
NT seq
+upstream
nt +downstream
nt
atggccgaaccctccatcgaatccctcagcgaagccgaagcggcggacgaactggcccgg
ctggccgccgaaatggcccgccacgacgccctctacgccgaggccgcgccggagatcacc
gacgcagactatgacgccctgcgcgcccgcaacctggccatcgagacgcgtttcccggcc
ctggtccgcgaggattcgccgtcgcggaaggtcggcgccccggtctccagccagttcgcc
gaggtgcgccacggcgtaccgatgttgtcgctggacaacgccttcgacgacggcgacgtc
accgacttcgtcgcccgcatccgccgcttcctgaacctgcccgccgacgaacggatcgcc
ttcgtcgccgagcccaagatcgacggtctttccgccaacatccgctacgagaacggcgtg
ctcgttcagggcgccacgcgcggcgacggacgtgcgggcgaggacatcacggcgaacctg
aaaacgctgaaagacatcccgcagaagctctccgggtccggctggcccgccctgatcgag
gtgcgcggagaggtctatgcccccaacgaggagttcgccgccttcaacgccgaggccgaa
gcggcgggccgccgcacctacgccaacccccggaacttcgccgccggatcgttgcgccag
atcgacccgagcgtgacggcggggcggcccttacgcttcttcgcctacgcctggggcgag
agctccgagccgttcgcggagacgcaaggacaggctctggagaaattcaacgcctggggc
ttcccggtcaatccgcgttcgacccgcgtcgagggcgccgaggggctggtcggcatctat
cacggcctcgaaaccgaccgcgccgggctcggctatgacatcgacggcgtggtctacaag
gtcgaccggctggactggcagagccgtctcggcttcgtctcgcgcagcccccgctgggcc
atcgcccacaaattcccggcgcagcaggcgaccacggtgctggaaggcatcgacatccag
gtcggccgcaccggctccctgacccccgtcgcccgcctcgcgcccgtcacggtcggcggc
gtcgtcgtccgcaacgccacactgcacaacgaggacgagattgcgcgcaaggacgtgcgc
atcggcgacaccgtcgtcctgcaacgcgccggcgacgtgatcccccagatcgtctcggtg
gtggccgacaaacgccccgccgacgccatgccctacctcttcccgacccactgcccggtc
tgcggctccgaggccgtgcggcccgagggcgaggtgcggcggcgctgcaccggcggcctg
atctgcgccgcccaactggtcgaacggctcaagcatttcgtcagccgccgcgccttcgac
atcgagggtctgggcgagaaacagctgatcgccttccatgagcgcggctggatccatgag
cccgccgacatcttccgtttggcccgcgacacggagaagctcgacgacctgcgcgccgag
gacggctacggcgagacgagcgtgaagaacctcgtcgccggcatcgacgcccgcaggacc
atcgcgttggagcgcctgctgttcggcctcggcatccgcgacatcggcgaccagacctcg
ctgctgctcgcccgccatttcggcgactggaaggccttccacgccgccgcgctggaggcc
gcctccggcatcccctcccccgaatggacccagcttgccgagggccacggcgtctcggcc
cggaccctgtcggtcatggccgccgccgagctgtcatctgacgatccctggcctgaggcg
ccgctggaccagaagctggccttcgccttccccggcgtcgccgcgcccgcccgccgggct
ctcgcggaactgaccaccgactggcccagcatcctcgaactggcccgcatcgcgcgtgag
gacggcccctcggcgacgctgggcgagatcgccggcatctcgggcgtcggcccggtcgcc
gcccgcgcggtcgccgagttcttccacgagccgcataaccagaccgtcgtcacgaacctg
atcgaccagctcgacgtcatcgaggacgccgaacgcccgaagtccgacacgcaggtcgcc
ggcaagaccgtcgtcttcaccggcgcgctggaacgcttcacccgcgacgaggccaaggcc
cgcgccgaaagcctgggcgccaaggtttccggctcggtgtcgaagaagaccgactatctg
gtcgccggtccgggcgccggctccaagctggccgacgcccagaaacacggcgtcgccgtg
ctgaccgaggatgagtggttggccctgatcggtggctag
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