Burkholderia stagnalis: WT74_10550
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Entry
WT74_10550 CDS
T04885
Symbol
ligA
Name
(GenBank) aromatic ring-opening dioxygenase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bstg
Burkholderia stagnalis
Pathway
bstg03030
DNA replication
bstg03410
Base excision repair
bstg03420
Nucleotide excision repair
bstg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bstg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
WT74_10550 (ligA)
03410 Base excision repair
WT74_10550 (ligA)
03420 Nucleotide excision repair
WT74_10550 (ligA)
03430 Mismatch repair
WT74_10550 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bstg03032
]
WT74_10550 (ligA)
03400 DNA repair and recombination proteins [BR:
bstg03400
]
WT74_10550 (ligA)
Enzymes [BR:
bstg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
WT74_10550 (ligA)
DNA replication proteins [BR:
bstg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
WT74_10550 (ligA)
DNA repair and recombination proteins [BR:
bstg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
WT74_10550 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
WT74_10550 (ligA)
MMR (mismatch excision repair)
DNA ligase
WT74_10550 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
WT74_10550 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
MctB
5_3_exonuc
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
AOK53098
LinkDB
All DBs
Position
1:complement(2393878..2395953)
Genome browser
AA seq
691 aa
AA seq
DB search
MARTQAEPPASQPDARAAWLRDQLERANYAYYVLDQPELPDAEYDRLFLELQQLEADHPE
LVTPESPTQRVGGEVASGFTPVVHAMPMLSLNNGFADEDIVAFDKRVADALDKDIDLAGT
VTDPVDYACELKFDGLAISLRYEHGVFVQAATRGDGTTGEDVTENVRTIRSIPLKLKGSH
MPAVLDVRGEVLMFKRDFARLNERQRAAEQREFANPRNAAAGSLRQLDPKITAQRPLSFF
AYGIGVLDGAAMPETHSALLDWYEQLGLPVNRERAVVRGAEGLLGFFHKVGEKRDALPYD
IDGVVYKVNRRDEQERLGFVSRAPRFALAHKFPAQEALTTLVAIDVQVGRTGAITPVARL
EPVFVGGATVTNATLHNEDEVRRKDIRIGDTVIVRRAGDVIPEVVGAILERRPEHAPEFV
MPTECPVCGSRIERLPDEAIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEKIIDQLV
EQNLVRTPADLFNLGFATLAELDRFAEKSAQNLLDSLEKAKHTTLARFIYALGIRHVGES
TAKDLAKHFGSLDPIMDASLEALLEVNDVGPVVAESLRQFFAEEHNRTVIEQLRAPGKVT
WAEGPPAPKAPQGVLAGKTVVLTGTLPTLTREAAKEMLEAAGAKVAGSVSKKTDYVVAGA
DAGSKLAKAEELGIPVLDEDGLHQLLEGHAP
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atggcccgaacccaagccgaaccgccagccagccagcccgacgcgcgcgccgcgtggctg
cgcgatcaactcgagcgggcgaactacgcctattacgtgctcgaccagccggaactgccc
gacgccgaatacgaccggctgttcctcgagctgcagcagctcgaagcggatcaccccgaa
ctcgtgacgcccgaatcgccgacgcagcgcgtcggcggcgaagtcgcgagcggcttcacg
ccggtcgtccatgcgatgccgatgctgtcgctcaacaacggtttcgccgacgaggacatc
gtcgcgttcgacaagcgcgtcgccgatgcgctcgacaaggacatcgacctcgccggcacc
gtgaccgacccggtcgattacgcgtgcgaactcaagttcgacggcctcgcgatttcgctg
cgctacgagcacggcgtgttcgtgcaggcggcgacgcgcggcgacggcacgaccggcgag
gacgtgacggaaaacgtccgcacgatccgctcgattccgttgaagctgaagggcagccat
atgcctgccgtgctcgacgtgcgcggcgaggtgctgatgttcaagcgcgatttcgcacgc
ctgaacgaacgccagcgcgccgcggagcagcgcgagttcgcgaatccgcgcaacgcggcg
gccggcagcctgcgccagctcgacccgaagatcaccgcgcagcgcccgctgtcgttcttc
gcatacgggatcggcgtgctcgacggcgcagcgatgcccgagacccacagcgcactgctc
gactggtacgaacagctcggcctgccggtgaaccgcgagcgcgcggtcgtgcgcggcgcg
gaagggctgctcggattcttccacaaggtcggcgagaagcgcgacgcgctgccgtacgac
atcgacggcgtcgtctacaaggtgaaccgccgcgacgaacaggagcggctcggcttcgtg
tcgcgcgcgccgcgcttcgcgctggcgcacaagttccccgcgcaggaggcgctcacgacg
ctcgtcgcgatcgacgtgcaggtcgggcgcaccggcgcgatcacgccggtcgcgcggctc
gagccggtgttcgtcggcggcgcgacggtgaccaacgcgacgctgcacaacgaagacgag
gtccgccgcaaggacatccgcatcggcgacaccgtgatcgtgcggcgcgcgggcgacgtg
atccccgaggtggtcggcgcgatcctcgagcggcggcccgaacacgcgcccgagttcgtg
atgccgaccgaatgcccggtgtgcggctcgcgcatcgaacggctgccggacgaggcgatc
gcgcgctgcacgggcggcctgttctgtccggcgcagcgcaagcaggcgctgtggcatttc
gcgcagcggcgcgcgctcgacatcgacggcctcggcgagaagatcatcgaccagctcgtc
gagcagaacctcgtgcgcacgccggccgacctgttcaacctcggcttcgcgacactcgcg
gaactcgaccggttcgccgagaagtccgcgcagaacctgctcgattcgctcgagaaggcc
aagcatacgacgctcgcgcgtttcatctacgcgctcggcatccgccatgtcggcgaatcg
accgcgaaggatctcgcgaagcacttcggctcgctggatccgatcatggatgcgtcgctc
gaggcgctgctcgaagtcaacgacgtcgggccggtggtcgccgaatcgctccgccagttc
tttgccgaagagcacaaccgcaccgtgatcgagcagctgcgtgcgcccggcaaggtcacg
tgggccgaagggccgcccgcgccgaaggcgccgcagggcgtgctcgccggcaagacggtc
gtgctgaccggcacgctgccgacgctcacgcgcgaggccgcgaaggaaatgctcgaggcg
gccggcgcgaaagtcgcgggctcggtctcgaagaagacggattacgtcgtcgcgggggcg
gacgcgggcagcaagctcgcgaaggccgaggaactcggcatccccgtgctggacgaagac
ggtttgcaccaactcctggagggccacgcgccatga
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