Burkholderia stabilis: BBJ41_01790
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Entry
BBJ41_01790 CDS
T04946
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bstl
Burkholderia stabilis
Pathway
bstl03030
DNA replication
bstl03410
Base excision repair
bstl03420
Nucleotide excision repair
bstl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bstl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BBJ41_01790 (ligA)
03410 Base excision repair
BBJ41_01790 (ligA)
03420 Nucleotide excision repair
BBJ41_01790 (ligA)
03430 Mismatch repair
BBJ41_01790 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bstl03032
]
BBJ41_01790 (ligA)
03400 DNA repair and recombination proteins [BR:
bstl03400
]
BBJ41_01790 (ligA)
Enzymes [BR:
bstl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BBJ41_01790 (ligA)
DNA replication proteins [BR:
bstl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BBJ41_01790 (ligA)
DNA repair and recombination proteins [BR:
bstl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BBJ41_01790 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BBJ41_01790 (ligA)
MMR (mismatch excision repair)
DNA ligase
BBJ41_01790 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BBJ41_01790 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
MctB
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
AOR66385
LinkDB
All DBs
Position
1:363588..365663
Genome browser
AA seq
691 aa
AA seq
DB search
MARTQAEPPASQPDARAAWLRDQLERANYAYYVLDQPDLPDAEYDRLFRELQQLETDHPE
LVTPDSPTQRVGGEAAGGFTPVVHDAPMLSLNNGFADEDIVAFDKRVADALDKTTDLAGS
VTEPVEYACELKFDGLAISLRYERGVFVQASTRGDGTTGEDVTANVRTIRSIPLKLKGAN
VPAVLDVRGEVLMFKRDFARLNERQREAEQREFANPRNAAAGSLRQLDSKITAQRPLSFF
AYGIGVLDGAPMPETHSALLDWYESFGLPVNRERAVVHGADGLLEFFRKVGEKRESLPYD
IDGVVYKVNRRDEQERLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARL
EPVFVGGATVTNATLHNEDEVRRKDIRIGDTVIVRRAGDVIPEVVGALLDRRPDDAAEFV
MPTECPVCGSKIERLPDEAIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEKIIDQLV
ELNLVRTPADLFNLGFATLAELDRFAEKSAQNLLDSLEKAKHTTLARFIYGLGIRHVGES
TAKDLAKHFGSLTPIMDASIEELLEVNDVGPIVAESLHQFFAEEHNRTVIEQLRAPGKVT
WTEGPPAPKAPQGVLAGKTVVLTGTLPTLTREAAKEMLEAAGAKVAGSVSKKTDYVVAGA
EAGSKLAKAEELGIPVLDEDGLHQLLEGNTP
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atggcccgaacccaagccgaaccgccagccagccagcccgacgcgcgcgccgcgtggctg
cgcgaccaactcgagcgggcgaactacgcctactacgtgctcgaccagccggatctgccc
gacgccgaatacgaccggctgtttcgcgagctgcagcagctcgaaaccgaccatcccgaa
ctcgtgacgcccgattcgccgacgcagcgcgtcggcggcgaagccgcgggcggcttcacg
ccggtcgtccacgatgcgccgatgctgtcgctgaacaacggtttcgccgacgaggacatc
gtcgcgttcgacaagcgcgtcgccgacgcactcgacaagacgaccgatctcgccggctcg
gtgacggagcccgtcgaatacgcgtgcgaactgaagttcgatggtctcgcgatctcgctg
cgctacgagcgcggcgtattcgtgcaggcgtcgacgcgcggcgacggcacgaccggcgag
gacgtgaccgcgaacgtgcgcacgatccgctcgatcccgttgaagctgaaaggcgcgaac
gtgccggccgtgctcgacgtgcgcggcgaggtgctgatgttcaagcgcgattttgcgcgc
ctgaacgaacgtcagcgtgaggccgagcagcgcgaattcgcgaatccgcgcaacgcggct
gccggcagcctgcgccagcttgactcgaagatcaccgcgcaacgtccgctgtcgttcttc
gcgtacggaatcggcgtgctcgacggggcgccgatgcccgagacgcacagcgcgctgctc
gactggtacgagtcgttcggcctgcccgtgaaccgcgagcgcgcggtcgtgcatggcgcc
gacggcttgctcgaattcttccgcaaggtcggcgagaagcgcgagtcgctgccgtacgac
atcgacggcgtcgtctacaaggtcaaccggcgcgacgagcaggagcgcctcggcttcgtg
tcgcgcgcgccgcgcttcgcgcttgcgcacaagttccccgcgcaggaagcgctgaccaag
ctcgtcgcgatcgacgtgcaggtcggccgcaccggcgcgatcacgccggtcgcgcgcctc
gagcccgtgttcgtcggcggcgcgaccgtgaccaacgcgacgctgcacaacgaggacgaa
gtccgccgcaaggacatccggatcggcgacaccgtgatcgtgcgacgcgcgggcgacgtg
attccggaggtcgtcggcgcgctgctcgaccggcgcccggacgatgcggccgagttcgtg
atgccgaccgaatgcccggtatgcggctcgaagatcgagcgcctgcctgacgaggcgatc
gcgcgctgcaccggcggcctgttctgcccggcgcagcgcaagcaggcgctgtggcacttc
gcgcagcgtcgcgcactcgacatcgacgggctcggcgagaagatcatcgaccagctcgtc
gaattgaatctcgtgcgcacgccggccgacctgttcaatctcggtttcgcgacgctcgcc
gagctcgaccgcttcgccgagaaatccgcacagaacctgctcgactcgctcgaaaaggcg
aagcacacgacgctcgcgcgcttcatctacgggctcggcatccgccatgtcggcgagtcg
accgcgaaggatctcgcgaagcatttcggctcgctgacgccgatcatggacgcgtctatc
gaggagctgctcgaagtcaacgacgtcgggccgatcgtcgccgagtcgctgcaccagttc
ttcgcggaagagcacaaccggaccgtgatcgagcagttgcgcgcgccgggcaaggtcacg
tggacggaagggccgcccgcgccgaaggcgccgcagggcgtgctggccggcaagacggtc
gtgctgacgggcacgctgccgaccctcacgcgcgaggcggcgaaggaaatgctcgaagcg
gccggtgctaaagtggccggttcggtatcgaagaagacggattacgtggtcgcgggcgcc
gaagccggcagcaagctcgcgaaggccgaggaactcggcatccccgtgctggacgaagac
ggtctgcaccaactcctggagggcaatacgccatga
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