Bacillus stercoris: QI003_03630
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Entry
QI003_03630 CDS
T09305
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bstr
Bacillus stercoris
Pathway
bstr03030
DNA replication
bstr03410
Base excision repair
bstr03420
Nucleotide excision repair
bstr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bstr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
QI003_03630 (ligA)
03410 Base excision repair
QI003_03630 (ligA)
03420 Nucleotide excision repair
QI003_03630 (ligA)
03430 Mismatch repair
QI003_03630 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bstr03032
]
QI003_03630 (ligA)
03400 DNA repair and recombination proteins [BR:
bstr03400
]
QI003_03630 (ligA)
Enzymes [BR:
bstr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
QI003_03630 (ligA)
DNA replication proteins [BR:
bstr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
QI003_03630 (ligA)
DNA repair and recombination proteins [BR:
bstr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
QI003_03630 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
QI003_03630 (ligA)
MMR (mismatch excision repair)
DNA ligase
QI003_03630 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
QI003_03630 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
HHH
PTCB-BRCT
BRCT_2
zf-NADH-PPase
RNA_pol_A_CTD
HHH_3
zf-IS66
zf-tcix
HNOB
Zn-ribbon_8
CTD11
Motif
Other DBs
NCBI-ProteinID:
WGV96151
LinkDB
All DBs
Position
707711..709717
Genome browser
AA seq
668 aa
AA seq
DB search
MDKETAKQRADELRRTINKYSYEYYTLDEPSVPDAEYDRLMQELIAIEEEHPDLRTPDSP
TQRVGGAVLEAFQKVTHGTPMLSLGNAFNADDLRDFDRRVRQAVGDDVAYNVELKIDGLA
VSLRYEDGYFVRGATRGDGTTGEDITENLKTIRNIPLKMNRELSIEVRGEAYMPKRSFEA
LNEERIKNEEEPFANPRNAAAGSLRQLDPKIAAKRNLDIFVYSIAELDEMGVETQSQGLD
FLDELGFKTNQERKKCGDIEEVITLIDELQAKRADLPYEIDGIVIKVDSLDQQEELGFTA
KSPRWAIAYKFPAEEVVTKLLDIELNVGRTGVITPTAILEPVKVAGTTVSRASLHNEDLI
KEKDIRILDKVVIKKAGDIIPEVVNVLVEQRTGEEKEFSMPTECPECGSELVRIEGEVAL
RCINPECPAQIREGLIHFVSRNAMNIDGLGERVITQLFKENLVRNVADLYKLTKEQVIQL
ERMGEKSTENLISSIQKSKENSLERLLFGLGIRFIGSKAAKTLAMQFESLENLKKASKDE
LLAVDEIGEKMADAVITYFHKEEMLELLNELQELGVNTLYKGPKKVKAEDSDSYFAGKTI
VLTGKLEELSRNEAKAQIEALGGKMTGSVSKNTDLVIAGEAAGSKLTKAQELNIEVWNEE
QLMEELKK
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atggacaaagaaacagccaagcagcgggcagacgaactgcgccgcaccatcaacaagtat
agctatgaatattacaccctagatgaaccgagcgtccctgatgccgaatacgacagattg
atgcaggagctgattgcgatcgaggaggagcatccagacctcagaacgcctgactctcct
acgcagcgcgtcggcggagccgtgcttgaagcgtttcaaaaggtcacccacggcacacca
atgctcagtctgggcaacgcctttaatgctgatgatctccgtgatttcgaccgccgtgtg
cgccaagccgtcggtgacgatgtggcgtataatgtggagctgaaaatagacggtcttgct
gtttctctccgttatgaagacggctattttgtcagaggagccacccgaggtgacggaacg
acgggagaggacattacggagaatctgaagacgattcgcaatatccccctcaaaatgaac
cgtgagctgtcgatcgaagtgcgcggcgaggcgtatatgccgaagcgttcgtttgaagca
ctcaatgaggaacgaattaaaaatgaagaagaaccgttcgctaatccgcgaaatgccgcg
gcaggatcacttagacagcttgatcctaaaattgcagcgaaacgaaacctcgatatcttc
gtctacagtatagcggagcttgacgagatgggtgtggagacgcaaagccaagggcttgat
tttctcgacgaactcggatttaaaacgaatcaggaacgaaaaaaatgcggcgacatagaa
gaagtcattacgctgatcgatgagcttcaggcgaagcgcgctgacctgccgtacgaaata
gacggcattgtcattaaagtcgattctctcgatcagcaggaggagctcggttttacggcg
aaaagcccgcgctgggccatcgcgtataagtttcctgctgaagaggtcgtgacgaagctt
ctcgatatcgaattaaatgtcggcagaacgggtgtgatcacgccgaccgcgattcttgag
ccggtaaaagttgccggcacaacggtctcaagagcatcccttcataacgaagatttaatt
aaagagaaggacattcggattttggataaggtcgtcatcaaaaaagcgggcgatatcatt
ccggaagtcgtgaacgtcctcgttgaacagcgcacaggagaagaaaaggaattcagcatg
ccgacggaatgtcctgaatgcggcagtgagctcgtccggatcgaaggagaagtggcgctt
cgctgcattaaccctgaatgtccggcgcaaatccgggaagggctgatccatttcgtttcc
cgcaatgccatgaacattgacgggctcggcgaacgagtgatcacacagctgtttaaggaa
aaccttgtccgcaatgtggcagatttatataagctgacgaaggaacaagtcatccagctc
gaacgcatgggtgaaaagtccactgaaaacctgatcagctccatccaaaaatcaaaagaa
aattcgttagagcgcctgctgtttgggcttggcatccgctttatcggatcaaaggctgca
aagacgctcgccatgcagtttgaaagcttggagaacctgaaaaaagcctctaaagacgaa
cttctcgcggttgatgaaatcggtgaaaaaatggctgacgcggtcatcacctattttcat
aaagaagaaatgcttgaactcttgaatgaacttcaggagctgggcgtaaacacgctctac
aaaggcccgaaaaaagtaaaggcagaggacagtgattcttactttgccggtaaaacaatt
gttctgacaggaaagctggaagagctgtcaagaaacgaagccaaagcgcaaatcgaagcg
ctgggcggaaaaatgacgggaagcgtcagcaaaaacacagacttggtcatcgccggagaa
gcggcgggaagcaagctgacaaaagcacaagagctgaacattgaagtgtggaatgaagaa
cagttaatggaagagctaaagaaataa
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integrated database retrieval system
