Bacillus subtilis subsp. subtilis 168: BSU06620
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Entry
BSU06620 CDS
T00010
Symbol
ligA
Name
(RefSeq) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bsu
Bacillus subtilis subsp. subtilis 168
Pathway
bsu03030
DNA replication
bsu03410
Base excision repair
bsu03420
Nucleotide excision repair
bsu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bsu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BSU06620 (ligA)
03410 Base excision repair
BSU06620 (ligA)
03420 Nucleotide excision repair
BSU06620 (ligA)
03430 Mismatch repair
BSU06620 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bsu03032
]
BSU06620 (ligA)
03400 DNA repair and recombination proteins [BR:
bsu03400
]
BSU06620 (ligA)
Enzymes [BR:
bsu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BSU06620 (ligA)
DNA replication proteins [BR:
bsu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BSU06620 (ligA)
DNA repair and recombination proteins [BR:
bsu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BSU06620 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BSU06620 (ligA)
MMR (mismatch excision repair)
DNA ligase
BSU06620 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BSU06620 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
HHH
PTCB-BRCT
zf-NADH-PPase
RNA_pol_A_CTD
5_3_exonuc
Zn-ribbon_8
HHH_3
zf-tcix
zf-IS66
Motif
Other DBs
NCBI-GeneID:
936056
NCBI-ProteinID:
NP_388544
Pasteur:
BG12835
BSORF:
BG12835
UniProt:
O31498
A0A6M3Z852
LinkDB
All DBs
Position
721613..723619
Genome browser
AA seq
668 aa
AA seq
DB search
MDKETAKQRAEELRRTINKYSYEYYTLDEPSVPDAEYDRLMQELIAIEEEHPDLRTPDSP
TQRVGGAVLEAFQKVTHGTPMLSLGNAFNADDLRDFDRRVRQSVGDDVAYNVELKIDGLA
VSLRYEDGYFVRGATRGDGTTGEDITENLKTIRNIPLKMNRELSIEVRGEAYMPKRSFEA
LNEERIKNEEEPFANPRNAAAGSLRQLDPKIAAKRNLDIFVYSIAELDEMGVETQSQGLD
FLDELGFKTNQERKKCGSIEEVITLIDELQAKRADLPYEIDGIVIKVDSLDQQEELGFTA
KSPRWAIAYKFPAEEVVTKLLDIELNVGRTGVITPTAILEPVKVAGTTVSRASLHNEDLI
KEKDIRILDKVVVKKAGDIIPEVVNVLVDQRTGEEKEFSMPTECPECGSELVRIEGEVAL
RCINPECPAQIREGLIHFVSRNAMNIDGLGERVITQLFEENLVRNVADLYKLTKERVIQL
ERMGEKSTENLISSIQKSKENSLERLLFGLGIRFIGSKAAKTLAMHFESLENLKKASKEE
LLAVDEIGEKMADAVITYFHKEEMLELLNELQELGVNTLYKGPKKVKAEDSDSYFAGKTI
VLTGKLEELSRNEAKAQIEALGGKLTGSVSKNTDLVIAGEAAGSKLTKAQELNIEVWNEE
QLMGELKK
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atggacaaagaaacagcgaagcagcgggcagaagaactgcgccgcaccatcaacaagtat
agctatgaatattacaccttagatgaaccgagcgtcccagatgccgaatacgacagattg
atgcaggagctgatcgcgatcgaggaggagcacccagacctcagaacgcctgactctcct
acgcagcgcgtcggcggagccgtgcttgaagcgtttcagaaagtcacccacggcacaccg
atgctcagtctgggcaacgcctttaatgctgatgatcttcgtgatttcgaccgccgtgtg
cgccagtccgtcggcgacgatgtggcgtataatgtggagctgaaaatagacggtcttgct
gtttctctccgttatgaagacggctattttgtcagaggggccacaagaggtgacgggacg
acgggagaggatatcacggagaatctgaagacgatccgcaatatcccccttaaaatgaac
cgtgagctgtcgatcgaagtgcgcggcgaggcgtatatgccgaagcgttcgtttgaagca
ctcaatgaggaacggattaaaaatgaggaagaaccgttcgccaatccgcgaaatgccgcg
gcgggatctctcagacagctcgatccgaaaattgcagcgaaacgaaacctcgatatcttc
gtctacagtatagcggagcttgacgagatgggtgtagagacgcaaagccaagggcttgat
tttctcgacgaactcggatttaaaacgaatcaggaacgaaaaaaatgcggcagcatagaa
gaagtcattacgctgatcgatgagcttcaggcgaagcgcgcggacctgccgtacgaaata
gacggcattgtcattaaagtcgattctctcgatcaacaggaggagctcggttttacggcg
aaaagcccgcgctgggccatcgcgtataagtttcctgctgaagaggtcgtgacgaagctt
ctcgatatcgaattaaatgtcggcagaacgggtgtgattacgccgactgcgattcttgag
ccggtaaaagttgccggcacaacggtctcaagagcatcccttcataacgaagatttaatt
aaagagaaggacattcggattttggataaggttgtcgtcaaaaaagcgggcgatatcatc
ccggaagttgtgaatgtcctcgttgaccagcgcacaggagaagaaaaggaattcagcatg
ccgacggaatgtcctgaatgcggcagtgaactcgtccggatcgaaggagaagtggcgctt
cgctgcattaaccctgaatgtccggcgcaaatccgggaagggcttatccatttcgtttcc
cggaatgccatgaacattgatgggctcggcgaacgagtgatcacacagctgtttgaggaa
aaccttgtccgcaatgtggcagatttatataagctgacgaaggaacgagtcatccagctc
gagcgcatgggcgaaaagtccactgaaaacctgatcagctccatccaaaaatcaaaagaa
aattcgttagagcgcctgctgtttgggcttggcatccgttttatcggatcaaaggccgca
aagacgcttgccatgcattttgaaagcttggagaacctgaaaaaagcctctaaagaggaa
cttctcgcggtagatgaaatcggtgaaaaaatggctgatgctgtgatcacctattttcat
aaagaagaaatgcttgaactcttgaatgaacttcaggagctgggcgtaaacacgctctac
aaaggcccgaaaaaagtaaaagcagaggacagcgactcttactttgctggtaaaacaatt
gttctgacaggaaagctggaagagctgtcaagaaacgaagccaaagcgcaaatcgaagcg
ctgggcggaaagctgactggaagcgtcagcaaaaacacagacttagtcatcgccggagaa
gcggcgggaagcaagctgacaaaagcacaagagctgaacattgaagtgtggaatgaagaa
cagttaatgggagagctaaagaaataa
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