Basfia succiniciproducens: A4G13_06160
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Entry
A4G13_06160 CDS
T06488
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bsun
Basfia succiniciproducens
Pathway
bsun03030
DNA replication
bsun03410
Base excision repair
bsun03420
Nucleotide excision repair
bsun03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bsun00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
A4G13_06160 (ligA)
03410 Base excision repair
A4G13_06160 (ligA)
03420 Nucleotide excision repair
A4G13_06160 (ligA)
03430 Mismatch repair
A4G13_06160 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bsun03032
]
A4G13_06160 (ligA)
03400 DNA repair and recombination proteins [BR:
bsun03400
]
A4G13_06160 (ligA)
Enzymes [BR:
bsun01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
A4G13_06160 (ligA)
DNA replication proteins [BR:
bsun03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
A4G13_06160 (ligA)
DNA repair and recombination proteins [BR:
bsun03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
A4G13_06160 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
A4G13_06160 (ligA)
MMR (mismatch excision repair)
DNA ligase
A4G13_06160 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
A4G13_06160 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
HHH_3
DZR_2
DUF4796_N
Zn_ribbon_NUD
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
QIM68998
LinkDB
All DBs
Position
complement(1371656..1373674)
Genome browser
AA seq
672 aa
AA seq
DB search
MDINQQIKQLRDTLRYHEYQYHVLDDPKIPDAEYDRLFHQLKALEQQHPELITADSPTQR
VGAKPLAGFAQITHELPMLSLDNAFSDEEFNAFVKRIQDRLIVLPQSLTFCCEPKLDGLA
VSIFYVNGVLTQAATRGDGTTGEDITLNIRTIRNIPLQLLTDNPPARLEVRGEVFMPHEG
FNRLNERALEHGEKTFANPRNAAAGSLRQLDPKITSRRPLVFNAYSVGIAEGVELPATHY
ERLQWLKSVGIPVNSEVQLCDGSEKVLEFYRSMQQKRPTLGYDIDGTVLKINDIGLQREL
GFISKAPRWAIAYKFPAQEELTRLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLHN
GDEIARLDIAIGDTVVIRRAGDVIPQIIGVLHERRPANAQAIVFPTQCPVCGSKIVRIEG
EAVARCTGGLFCDAQRKEALKHFVSRRAMDIDGVGAKLIEQLVDKELIRTPADLFKLDLI
TLMRLERMGEKSAQNALDSLEKAKNTTLARFIFALGIREVGEATALNLANHFKNLDALQA
ASPEQLQEVADVGEVVANRIYVFWREQHNIDAVNDLIAQGIHWETVETKEAGENPFKGKT
VVLTGTLTQMGRNEAKDLLQQLGAKAAGSVSAKTHFVIAGDNAGSKLTKAQELGVAVMSE
AEFLAIVNAYKR
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atggatattaatcaacaaattaaacaattaagggatacgctgcgttatcacgaatatcaa
tatcacgtattagacgatccgaaaatccccgatgcggaatacgaccgtttatttcatcaa
ctaaaagcgctggagcaacagcacccggagttaattacggcggattcgccgactcaacgg
gtcggcgccaagccgcttgccggatttgctcaaatcacccatgaacttcccatgttatcg
ctggataacgctttctcagatgaagaatttaatgcctttgtaaagcgtattcaggatcga
ttgattgtgttgccgcaatcgctgacattttgttgcgaacctaaattagacgggctggcg
gtgagtattttttatgtgaacggcgtattaactcaagcggcgacccgcggcgacggcaca
acgggcgaagacattaccttaaatattcgcactatccgcaatattcccttgcaattatta
acggacaatccgccggcccggctggaagtgcgcggtgaagtttttatgccgcacgaaggt
tttaaccgcctgaatgagcgtgcccttgaacatggtgagaaaacttttgccaatccgcgt
aatgcggcggcgggttcactgcgccagttagacccgaaaattaccagccggcgtcctttg
gtgtttaatgcttacagtgttggcattgccgaaggcgtggaattgcccgctactcattat
gaacggctgcaatggctgaaatccgtgggtattccggtaaattctgaagttcagctatgt
gacggaagcgaaaaagtgctggaattttaccgcagtatgcagcaaaagcgtccgaccttg
ggttacgatatcgacggtacggtgttaaaaatcaacgatattggcttgcagcgggaatta
ggttttatttctaaagcgccgcgttgggcgattgcctataaatttccggcgcaagaggaa
ttaacccggttaaatgatgttgaattccaagtgggcagaaccggcgcaattacgccggtg
gcaaaacttgagccggtgtttgtggcgggcgttaccgtgagtaacgcaactttacataac
ggcgatgaaattgcgcgccttgatatagccattggcgatacggtggttattcgtcgggcg
ggggatgtgattccgcaaattatcggcgtgcttcacgaacgccgtccggctaatgcgcag
gctattgtttttccgactcaatgcccggtttgcggttctaaaatcgtgcgtattgaaggc
gaagcggtggcacgctgtaccggcggcttattctgtgacgcccagcgcaaagaagcgctt
aaacattttgtctcccgtcgggcaatggatattgacggtgtcggggcaaaactgattgag
cagttggtggataaagaacttatccgcacgccggcggatctgtttaaattggatttaatt
acacttatgcgtttggagcgtatgggggaaaaatccgctcaaaatgcgttggacagtttg
gaaaaagcgaaaaacaccacgcttgctcgctttatttttgccttaggtattcgtgaagtg
ggcgaggcgacggcgctgaatctggcgaatcactttaagaatttagacgccttacaggcg
gcaagcccggagcaattgcaggaagtggcggatgtgggcgaagtggtggcaaaccgtatt
tatgtattttggcgcgagcagcataatattgatgcggtaaatgatctgattgctcaagga
attcattgggaaaccgttgaaacaaaagaagcgggcgagaatcctttcaaaggcaaaacc
gttgtgcttaccggcacattaacgcaaatggggcgaaacgaggcaaaagatttgctgcag
cagctcggcgcaaaagcggcgggcagcgtttccgccaaaactcattttgtgattgccggc
gacaatgccggttccaaattaaccaaagcgcaggaattgggcgtggcggtgatgagcgag
gcggaatttctggctattgtgaacgcttacaagcgctaa
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