Brucella suis bv. 2 PT09172: BSPT2_I1436
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Entry
BSPT2_I1436 CDS
T03504
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bsuv
Brucella suis bv. 2 PT09172
Pathway
bsuv03030
DNA replication
bsuv03410
Base excision repair
bsuv03420
Nucleotide excision repair
bsuv03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bsuv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BSPT2_I1436 (ligA)
03410 Base excision repair
BSPT2_I1436 (ligA)
03420 Nucleotide excision repair
BSPT2_I1436 (ligA)
03430 Mismatch repair
BSPT2_I1436 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bsuv03032
]
BSPT2_I1436 (ligA)
03400 DNA repair and recombination proteins [BR:
bsuv03400
]
BSPT2_I1436 (ligA)
Enzymes [BR:
bsuv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BSPT2_I1436 (ligA)
DNA replication proteins [BR:
bsuv03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BSPT2_I1436 (ligA)
DNA repair and recombination proteins [BR:
bsuv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BSPT2_I1436 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BSPT2_I1436 (ligA)
MMR (mismatch excision repair)
DNA ligase
BSPT2_I1436 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BSPT2_I1436 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HHH
Motif
Other DBs
NCBI-ProteinID:
AIB24892
LinkDB
All DBs
Position
I:complement(1389885..1392044)
Genome browser
AA seq
719 aa
AA seq
DB search
MSDISVEKLTELEAAAELERLARAIAHHDELYHAKDRPEISDAAYDALKRRNEAIEAHFP
ALVRDDSPSRRVGAAPALATFAPVVHARPMLSLDNAFSDEDVRDFVGSVYRFLGQLPDDS
IAFTAEPKIDGLSMSIRYENGILVSGATRGDGTTGENVTANIRTIAEIPNRLPAGAPAVV
EVRGEVYMAKSDFLTLNAQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLRFFAYAWG
EMSDMPADTQLGMVEVFRQWGFPVNPLMKRFNSVDGLLAHYRAIGMERPTLDYDIDGVVY
KVDRLDLQTRLGFRSRSPRWAIAHKFPAEQALTILRGIDIQVGRTGALTPVARLEPITVG
GVVVTNATLHNEDYIKGIGQKGEPIREGRDIRIGDSVIVQRAGDVIPQIVDVVLEEGKKR
GEPYQFPHVCPACGSHAVREEGEAVRRCTGGLICPAQAVERIRHFVSRNAFDIEGLGEKQ
VEFFFNAEDPALCIRSPADIFTLKKRQENSLTKLQNIEGFGATSVKKLYDAIDARREIAL
HRFLFGLGIRHVGEVNAKRLARAYLSYAAFEKAALEAVPPKEGDRTDKGSEAWQDMLAVE
GIGSIVAEAVVDFYGEPHNREVLAALLAEVTPLDEEARVATGSPVEGKTVVFTGSLERMS
RDEAKAMAERHGAKTAGSVSKKTDLVVAGPGAGSKLAKATELGIEVINEDDWFKLVGED
NT seq
2160 nt
NT seq
+upstream
nt +downstream
nt
atgtccgatatttccgtcgagaaactgaccgaactcgaagctgccgccgaactggaacgg
ctggcgcgcgcgattgctcatcacgacgagctttatcacgccaaggacaggccggaaatt
tccgatgcggcttatgatgcactgaagcggcgcaacgaggcgattgaagcgcactttccg
gcacttgtccgcgatgacagcccgtcgcggcgtgtgggtgcagccccggcgcttgccacc
tttgcgcctgttgttcacgcgcggcccatgctgtcgctggataatgcctttagtgatgag
gacgtgcgtgattttgttggcagcgtctatcgctttctgggccaactgccggatgattcc
atcgcctttaccgcagaaccgaagatcgatgggctttccatgtcgatccgttacgagaat
ggaattctggttagcggtgcgacacgcggggatggcacaacgggcgagaatgtaacagcc
aatatccgcaccattgctgaaatcccgaacaggcttccggcaggtgcgcctgctgtcgtg
gaagtgcgcggcgaggtctatatggccaagagcgactttctgacgctcaatgcgcagatg
gaggcggagggcaagcagacctatgtgaacccgcgcaatacggcagcaggttcgctgcgc
cagcttgatgcgaaggtgacggcaagccgcaagctcaggttcttcgcctatgcctggggg
gaaatgtcggacatgcctgcggatacgcaattgggcatggtcgaggtttttcgccaatgg
ggctttccggtcaatccgctgatgaagcggttcaacagcgtggatgggttgcttgcgcat
tatcgcgccatcggcatggagcgtcccacgctcgattacgatatcgacggtgttgtttac
aaggtggaccggctcgacctgcaaacccggcttggttttcgctcgcgcagcccgcgctgg
gcgattgcgcataaattcccggcggaacaggcgctcaccattttgcgcggcatcgatatt
caggtgggccgcactggcgcgctgacgccggtggcgcggctggagccaatcaccgtcggc
ggtgtggttgtgaccaacgcgacgctgcacaatgaggactatatcaagggcataggtcag
aagggcgagccgatccgggaggggcgcgatatccgcattggcgatagcgtgatcgtgcag
cgcgcgggcgatgtcatcccgcagatcgtggatgtggtgcttgaggaaggcaaaaaacgc
ggcgagccttatcagtttccccatgtctgccccgcctgcggcagccatgccgtgcgcgag
gagggcgaggcggtacgccgctgcaccggcgggctgatctgccctgcgcaggcggtggaa
cgcatccgccattttgtgtcgcgcaatgccttcgacattgaggggcttggcgaaaagcag
gtcgagttcttcttcaatgcggaagatccggccctttgcatccgctcgcctgccgatatt
ttcacactgaaaaagcggcaggaaaactcgctgaccaagcttcagaatatcgaaggcttt
ggcgcaacttccgtgaagaagctttatgacgccatcgatgcgcggcgcgagattgcactc
caccgctttctgtttggtcttggcatccgccatgtgggcgaggtgaatgccaagcgcctt
gcccgcgcctatctttcatatgccgcttttgagaaggcggcgctggaggctgtgccgcca
aaagaaggcgaccgcaccgacaagggcagcgaagcgtggcaggacatgctggccgtggag
gggatcggttccatcgtggcggaagccgtggtcgatttttatggcgagccgcataaccgc
gaagtgctggccgcacttcttgccgaagtaacgccgcttgatgaggaagcgcgtgtggcg
accggttcgcccgtcgagggcaagacggtggttttcaccggcagtctggagcgcatgtca
cgcgatgaagcgaaggctatggctgagcgccatggcgcgaagacggcaggctctgtctcc
aagaagaccgatctcgtggtggcagggccgggggccggttccaagcttgccaaggcgacg
gaactgggcattgaggttatcaatgaagacgactggttcaagcttgttggggaggattga
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