Bacillus subtilis XF-1: C663_0686
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Entry
C663_0686 CDS
T02459
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bsx
Bacillus subtilis XF-1
Pathway
bsx03030
DNA replication
bsx03410
Base excision repair
bsx03420
Nucleotide excision repair
bsx03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bsx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
C663_0686 (ligA)
03410 Base excision repair
C663_0686 (ligA)
03420 Nucleotide excision repair
C663_0686 (ligA)
03430 Mismatch repair
C663_0686 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bsx03032
]
C663_0686 (ligA)
03400 DNA repair and recombination proteins [BR:
bsx03400
]
C663_0686 (ligA)
Enzymes [BR:
bsx01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
C663_0686 (ligA)
DNA replication proteins [BR:
bsx03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
C663_0686 (ligA)
DNA repair and recombination proteins [BR:
bsx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
C663_0686 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
C663_0686 (ligA)
MMR (mismatch excision repair)
DNA ligase
C663_0686 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
C663_0686 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
HHH
PTCB-BRCT
BRCT_2
Zn_ribbon_NUD
5_3_exonuc
HHH_3
HNOB
zf-IS66
zf-tcix
Zn_ribbon_8
Motif
Other DBs
NCBI-ProteinID:
AGE62529
LinkDB
All DBs
Position
737399..739405
Genome browser
AA seq
668 aa
AA seq
DB search
MDKETAKQRAEELRRTINKYSYEYYTLDEPSVPDAEYDRLMQELIAIEEEHPDLRTPDSP
TQRVGGAVLEAFQKVTHGTPMLSLGNAFNADDLRDFDRRVRQAVGDDVAYNVELKIDGLA
VSLRYEDGYFVRGATRGDGTTGEDITENLKTIRNIPLKMNRELSIEVRGEAYMPKRSFEA
LNEERIKNEEEPFANPRNAAAGSLRQLDPKIAAKRNLDIFVYSIAELDEMGVETQSQGLD
FLDELGFKTNQERKKCGDIEEVITLIDELQAKRADLPYEIDGIVIKVDSLDQQEELGFTA
KSPRWAIAYKFPAEEVLTKLLDIELNVGRTGVITPTAILEPVKVAGTTVSRASLHNEDLI
KEKDIRILDKVVVKKAGDIIPEVVNVLVEQRTGEEKEFSMPTECPECGSELVRIEGEVAL
RCINPECPAQIREGLIHFVSRNAMNIDGLGERVITQLFEENLVRNVADLYKLTKERVIQL
ERMGEKSTENLISSIQKSKENSLERLLFGLGIRFIGSKAAKTLAMHFESLENLKKASKEE
LLAVDEIGEKMADAVITYFHKEEMLELLNELQELGVNTLYKGPKKVKAEDSDSYFAGKTI
VLTGKLEELSRNEAKAQIEALGGKLTGSVSKNTDLVIAGEAAGSKLTKAQELNIEVWNEE
QLMGELKK
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atggacaaagaaacagcgaagcagcgggcagaagaactgcgccgcaccatcaacaagtat
agctatgaatattacaccttagatgaaccgagcgtcccagatgccgaatacgacagattg
atgcaggagctgattgcgattgaggaggagcacccagacctcagaacgcctgactctcct
acgcagcgcgtcggcggagctgtgcttgaagcgtttcagaaagtcacccacggcacaccg
atgctcagtctgggcaacgcctttaatgctgatgatcttcgtgatttcgaccgccgtgtg
cgccaagccgtcggcgacgatgtggcgtataatgtggagctgaaaatagacggtcttgct
gtttctctccgttatgaagatggctattttgtcagaggggccacaagaggtgacggaacg
acgggagaggatattacggagaatctgaagacgattcgcaatatccccctcaaaatgaac
cgtgagctgtcgatcgaagtgcgcggcgaggcgtatatgccgaagcgttcgtttgaagct
cttaatgaggaacggattaaaaatgaggaagagccgttcgccaatccgcgaaatgccgcg
gcgggatctctcaggcagctcgatccgaaaattgcagcgaaacgaaacctcgatatcttc
gtctacagtatagcggagcttgacgagatgggtgtggagacgcaaagccaagggcttgat
tttctcgacgaactcggatttaaaacgaatcaggaacgaaaaaaatgcggcgacatagaa
gaagtcattacgctgatcgatgagcttcaggcgaagcgcgctgacctgccgtatgaaata
gacggcattgtcattaaagtcgattctctcgatcagcaggaggagctcggttttacggcg
aaaagcccgcgctgggccatcgcgtataagtttcctgctgaagaggtcttgacgaagctt
ctcgatatcgaattaaatgtcggcagaacgggtgtgattacgccgaccgcgattcttgag
ccggtaaaagttgccggcacaacggtctcaagagcatcccttcataacgaagatttaatt
aaagagaaggacattcggattttggataaggttgtcgtcaaaaaagcgggcgatatcatc
ccggaagttgtgaatgtcctcgttgaacagcgcacaggagaagaaaaggaattcagcatg
ccgacggaatgtcctgaatgcggcagtgagctcgtccggatcgaaggagaagtggcgctt
cgctgcattaaccctgaatgtccggcgcaaatccgggaagggctgatccatttcgtttcc
cgcaatgccatgaacattgacgggctcggcgaacgagtgatcacacagctgtttgaggaa
aaccttgtccgcaatgtggcagatttatataagctgacgaaggaacgagtcatccagctc
gagcgcatgggtgaaaagtccactgaaaacctgatcagctccatccaaaaatcaaaagaa
aattcgttagagcgtttgctgtttgggcttggcatccgctttatcggatcaaaggctgca
aagacgcttgccatgcattttgaaagcttggagaacctgaaaaaagcctctaaagaggaa
cttctcgcggtagatgaaatcggtgaaaaaatggctgatgctgtgatcacctattttcat
aaagaagaaatgcttgaactcttgaatgaacttcaggagctgggcgtaaacacgctctac
aaaggcccgaaaaaagtaaaagcagaggacagcgactcttactttgccggtaaaacaatt
gttctgacaggaaagctggaagagctgtcaagaaacgaagccaaagcgcaaatcgaagcg
ctgggcggaaagctgactggaagcgtcagcaaaaacacagacttagtcatcgccggagaa
gcggcgggaagcaagctgacaaaagcacaagagctgaacattgaagtgtggaatgaagaa
cagttaatgggagagctaaagaaataa
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integrated database retrieval system
