Bos taurus (cow): 614487
Help
Entry
614487 CDS
T01008
Symbol
KDM2B
Name
(RefSeq) lysine-specific demethylase 2B isoform X6
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
bta
Bos taurus (cow)
Pathway
bta03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
bta00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
614487 (KDM2B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
bta03000
]
614487 (KDM2B)
04121 Ubiquitin system [BR:
bta04121
]
614487 (KDM2B)
03036 Chromosome and associated proteins [BR:
bta03036
]
614487 (KDM2B)
Enzymes [BR:
bta01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
614487 (KDM2B)
Transcription factors [BR:
bta03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
614487 (KDM2B)
Ubiquitin system [BR:
bta04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
614487 (KDM2B)
Chromosome and associated proteins [BR:
bta03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
614487 (KDM2B)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
614487 (KDM2B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
JHD
F-box
Cupin_8
JmjC
Motif
Other DBs
NCBI-GeneID:
614487
NCBI-ProteinID:
XP_005218040
Ensembl:
ENSBTAG00000002328
VGNC:
30524
LinkDB
All DBs
Position
17:53650993..53769702
Genome browser
AA seq
1309 aa
AA seq
DB search
MEAEKDSGRRLRPIDRQRYDENEDLSDVEEIVSARGFSLEEKLRSQLYQGDFVHAMEGKD
FNYEYVQREALRVPLVFREKDGLGIKMPDPDFTVRDVKLLVGSRRLVDVMDVNTQKGTEM
SMSQFVRYYETPEAQRDKLYNVISLEFSHTKLEHLVKRPTVVDLVDWVDNMWPQHLKEKQ
TEATNAIAEMKYPKVKKYCLMSVKGCFTDFHIDFGGTSVWYHVFRGGKIFWLIPPTLHNL
ALYEEWVLSGKQSDIFLGDRVERCQRIELKQGYTFFIPSGWIHAVYTPVDSLVFGGNILH
SFNVPMQLRIYEIEDRTRVQPKFRYPFYYEMCWYVLERYVYCMTQRSYLTQEYQRESMLI
DAPRKPSIDGFSSDSWLEMEEESCEQQPQEEKEEEEEEEEEEEGADKTPRASTDGPASPT
STPSEDQEAPGKKPKAPAMRFLKRTLSNESEDSVKSATMPTDYPKTPTGSPATEVSAKWT
HLTEFELKGLKALVEKLESLPENKKCVPEGIEDPQALLEGVKNVLKEHAEDDPSLAITGV
PVVTWPKKTPKNRAVGRPKGKLGPASAVKLAANRTTAGARRRRTRCRKCEACLRTECGEC
HFCKDMKKFGGPGRMKQSCIMRQCIAPVLPHTAVCLVCGEAGKEDTVEEEEGKFNLMLME
CSICNEIIHPGCLKIKESEGVVNDELPNCWECPKCNHAGKTGKQKRGPGFKYASNLPGSL
LKEQKMNRDNKEGQEPAKRRSECEEAPRRRSDEHPKKVPPDGILRRKSDDVHLRRKRKYE
KPQELSGRKRASTLQTSPGSSSHLSPRPPLGSSLSPWWRSSLTYFQQQLKPGKEDKLFRK
KRRSWKNAEDRITLANKPLRRFKQEPEDDLPEAPPKTRESDHSRSSSPTAGPSTEGAEGP
EEKKKVKMRRKRRLPNKELSKELSKELNQEIQKTESSLAQENHQPIKSEPESENEEPKRP
LGLCERPHRFSKGLNGTPRELRHQLGPGLRSPPRVISRPPPSVSPPKCIQMERHVIRPPP
ISPPPDSLPLDDGAAHVMHREVWMAVFSYLSHQDLCVCMRVCKTWNRWCCDKRLWTRIDL
NHCKSITPLMLSGIIRRQPVSLDLSWTNISKKQLSWLINRLPGLRDLVLSGCSWIAVSAL
CSSSCPLLRTLDVQWVEGLKDAQMRDLLSPPTDNRPGQMDNRSKLRNIVELRLAGLDITD
ASLRLIIRHMPLLSKLHLSYCNHVTDQSINLLTAVGTTTRDSLTEINLSDCNKVTDQCLS
FFKRCGNICHIDLRYCKQVTKEGCEQFIAEMSVSVQFGQVEEKLLQKLS
NT seq
3930 nt
NT seq
+upstream
nt +downstream
nt
atggaggcagagaaagactctggaagaagattgcgcccgattgaccgccaaagatacgac
gagaacgaggacttgtcggacgtggaggagatcgtcagcgcccgcggcttcagcctggag
gaaaagctgcgcagccagctgtaccagggggatttcgtgcacgccatggagggcaaagat
ttcaactatgagtatgtgcagagagaagctctcagagttcccctggtatttcgagaaaag
gatggcctgggaattaagatgcctgaccctgatttcacagtccgagatgtcaaactccta
gtgggtagccgacggctggtggacgtgatggacgtgaacacccagaaaggcacggagatg
agcatgtcccagttcgtacggtactacgagacgcccgaggcccagcgggacaagctgtac
aacgtcatcagccttgagttcagccacaccaagctggagcacttggtcaagcgtcccacc
gtggtagacctggtggactgggtggacaacatgtggcctcagcacttgaaggagaagcag
acggaagccacgaatgccattgcagagatgaagtacccgaaagtgaagaagtactgtctg
atgagtgtgaagggttgtttcactgacttccacatcgactttggaggtacttccgtttgg
taccatgttttccggggtgggaagattttttggctgattcctccaaccttgcacaatttg
gcactgtatgaggagtgggtgctgtcaggcaaacagagcgacatcttcctgggagaccgc
gtggagcgatgccaaagaattgagctgaaacagggttacacgtttttcatcccttccggc
tggatccatgcagtctacactcccgtagactctctggtgttcggcgggaacatcctgcac
agcttcaacgtgcccatgcagctgcggatctacgagatcgaggacagaacgcgggtgcag
cccaaattccgttaccccttctactatgagatgtgctggtatgtcttggagagatacgtg
tactgtatgacccagcggtcctacctcactcaggaataccagagagaatcaatgcttatt
gatgccccaagaaagcccagcatagacggcttctcatctgattcctggctggagatggag
gaggagtcctgtgagcagcagccccaggaggagaaggaggaagaggaggaagaagaggaa
gaggaggagggtgcagataagacccccagagcatccaccgatggccctgcctcacccacg
agcaccccgtccgaggaccaggaggcccccgggaagaagcccaaagcccctgccatgcgg
ttcctcaaaaggactctgtcaaacgagtcagaggacagcgtgaagtctgccacgatgccc
actgactaccccaagacgcccaccggctctcctgccactgaggtctctgccaaatggacc
cacctcaccgagtttgaactgaagggcctgaaagctctggtggagaaacttgaatccctc
ccggagaacaagaagtgtgtccctgagggcatcgaggacccccaggccctcctggagggt
gtgaagaatgtcctgaaggagcacgcggaggacgaccccagtctggccatcactggggtc
cccgtagtcacttggccaaagaagactccaaagaaccgggcggtaggtcggcccaagggg
aagctgggcccggcctccgcggtgaagttggccgccaaccggaccacggcgggagctcgc
cggcgccggacgcgatgccgcaagtgcgaggcctgcctgcggacggagtgcggcgagtgc
cacttctgcaaggacatgaagaagttcgggggccccgggcggatgaagcagagctgcatc
atgaggcagtgcatcgcgccagtgctgcctcacaccgctgtgtgcctggtgtgtggcgag
gcaggaaaagaggacacagtggaagaggaagaaggcaaatttaacctcatgctcatggaa
tgctccatctgcaatgaaatcatccaccctggatgccttaagattaaggagtcagagggc
gtggtcaacgatgagcttccaaactgctgggagtgtcccaagtgtaaccacgccggcaag
accgggaaacaaaagcgtggccctggctttaagtacgcctccaacctgcctggctccctg
ctcaaggagcagaagatgaaccgggacaacaaggaagggcaggagcctgccaagcggagg
agtgagtgtgaggaggcgccccggcgcaggtccgacgagcaccccaagaaggtgcccccc
gacggcatcctgcgccgaaagtcggacgacgtgcacctgaggcggaagcggaaatacgag
aagccccaggagctgagtggacgcaagcgagcctcgacgcttcaaacgtcccccggttcc
tcctctcacctctcgccgaggccccctctaggcagcagcctcagcccctggtggagatcc
agtctcacttacttccagcagcagctaaaacctggcaaagaagataagcttttcaggaaa
aagcgacggtcctggaagaacgccgaggaccggataactctagccaacaagcctctccgg
cggttcaagcaggaaccagaggacgacctacccgaggcgccccccaagaccagggagagc
gaccactcgcgctccagctcccctactgccgggccaagcacagagggcgcggaggggccc
gaggagaagaagaaggtgaagatgcgccggaagcggcggctccccaacaaggagctgagc
aaggagctgagcaaggagctgaaccaggagatccagaagacggagagcagcctggcccag
gagaatcaccagcccatcaagtcggagcctgagagcgagaacgaggagcccaagcggccc
ctgggcctctgcgagcgcccccaccgcttcagcaaggggctcaacggcaccccccgggag
ctgcggcaccagctggggcccggcctgcgcagcccgccccgagtcatctcccggccccct
ccctccgtgtccccgcccaagtgcatccagatggagcgacatgtgatccggccgcccccc
atcagccccccgcccgactcgctgcccttggatgacggggcagcccatgtcatgcacagg
gaggtgtggatggccgtcttcagctacctcagccaccaagacttgtgtgtctgcatgcgg
gtctgcaagacctggaaccgctggtgctgcgataagcggttatggacccgcatcgatttg
aaccactgcaagtccatcacgcccctgatgctaagcggcatcatccggcgacagcctgtc
tccctagacctcagctggaccaatatctccaagaaacagctgagctggctcatcaaccgg
ttgcctgggctccgagacttggtgctgtccggctgctcgtggatcgcagtctctgccctc
tgtagctccagctgtccactgctccggaccctggatgtccagtgggtagaagggctgaag
gacgcccagatgcgggacctcctgtccccgcctacagacaacaggccaggtcagatggac
aatcggagtaagctccggaacattgtggagctgcgtctggccggcctggacatcacggac
gcctccctgcggcttatcatccgccacatgcccctgctctccaagctccacctcagttac
tgtaaccacgtcactgaccagtccatcaacctgctcactgctgtgggcaccaccacccgg
gactccttaaccgaaatcaacctgtcagactgcaataaggtgactgaccagtgcctgtcc
ttcttcaaacgctgtgggaatatctgtcacattgacctgaggtactgcaagcaagttacc
aaggaaggctgcgagcagttcatagccgaaatgtctgttagtgtccagttcgggcaagtg
gaagaaaaactcctgcaaaaactgagttag
DBGET
integrated database retrieval system
