Bacteroides thetaiotaomicron VPI-5482: BT_0894
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Entry
BT_0894 CDS
T00122
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bth
Bacteroides thetaiotaomicron VPI-5482
Pathway
bth03030
DNA replication
bth03410
Base excision repair
bth03420
Nucleotide excision repair
bth03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bth00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BT_0894
03410 Base excision repair
BT_0894
03420 Nucleotide excision repair
BT_0894
03430 Mismatch repair
BT_0894
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bth03032
]
BT_0894
03400 DNA repair and recombination proteins [BR:
bth03400
]
BT_0894
Enzymes [BR:
bth01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BT_0894
DNA replication proteins [BR:
bth03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BT_0894
DNA repair and recombination proteins [BR:
bth03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BT_0894
NER (nucleotide excision repair)
GGR (global genome repair) factors
BT_0894
MMR (mismatch excision repair)
DNA ligase
BT_0894
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BT_0894
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
HHH
PTCB-BRCT
BRCT_2
SpoOE-like
Motif
Other DBs
NCBI-ProteinID:
AAO76001
UniProt:
Q8A9C1
LinkDB
All DBs
Position
1096350..1098350
Genome browser
AA seq
666 aa
AA seq
DB search
MDIKEKIEELRAELHRHNYNYYVLNAPEISDKEFDDKMRELQDLELAHPEYKDENSPTMR
VGSDINKNFTQVAHKYPMLSLANTYSEGEVTDFYERVRKALNEDFEICCEMKYDGTSISL
TYEDGKLVRAVTRGDGEKGDDVTDNVKTIRSIPLVLHGDNYPSSFEIRGEILMPWEVFEE
LNREKEAREEPLFANPRNAASGTLKLQNSSIVASRKLDAYLYYLLGDNLPCDGHYENLQE
AAKWGFKISDLTRKCQTLEEVFEFINYWDVERKNLPVATDGIVLKVNSLRQQKNLGFTAK
SPRWAIAYKFQAERALTRLNMVTYQVGRTGAVTPVANLDAVQLSGTVVKRASLHNADIIE
GLDLHIGDMVYVEKGGEIIPKITGVDKDARSFMLGEKVRFITNCPECGSKLIRYEGEAAH
YCPNETACPPQIKGKIEHFISRKAMNIDGLGPETVDMFYRLGLIHNTADLYELKADDIKG
LDRMGEKSAENIITGIEQSKTVPFERVIFALGIRFVGETVAKKIAKSFGDIDELRQADLE
KLISIDEIGEKIARSILLYFSNESNRELVGRLKEAGLQLYRTEEDMSGYTDKLAGQSIVI
SGVFTHHSRDEYKDLIEKNGGKNVGSISAKTSFILAGDNMGPAKLEKAKKLGVTILSEDE
FLKLIS
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
atggatataaaggaaaaaatagaggaattgcgtgctgaacttcatcggcacaactataat
tattacgttttgaatgctcccgaaatttcagataaggagtttgatgataagatgcgtgaa
ctccaggatctggagctggcacatccggaatataaagatgaaaattcgcccactatgcgt
gtcggcagtgacattaacaagaatttcacgcaggttgcacataaataccccatgttgtct
ttggcaaatacgtactctgaaggcgaagttacagatttttatgagcgtgtacgaaaagcg
ttgaatgaggattttgagatttgctgtgagatgaaatatgatggtacttccatttctctg
acctacgaagatggaaaactggttcgtgccgttacacgcggagatggagaaaagggcgat
gatgtgacagataatgtaaagacaatccgttctattccacttgtgctccatggtgacaat
tatccttcttcttttgagattcgtggggaaatccttatgccctgggaagtatttgaggag
ttgaaccgcgaaaaagaagcacgtgaggagccgcttttcgctaatccgagaaatgcagcc
tcaggaacattgaagcttcagaattcttctattgtagcttctcgcaagctggatgcgtat
ttatattatcttttgggagataatctgccttgtgatggacattatgaaaatcttcaggaa
gccgcaaaatggggatttaaaatctctgatttgacgcgtaaatgccagacgttggaagag
gtttttgaatttatcaattattgggatgtagaacgaaagaatctgcctgtagctactgat
ggaatcgtcttgaaggtaaatagtctgagacaacaaaagaatctcggttttacggcgaaa
tctcctagatgggcgattgcctataaatttcaggcagaacgtgcattgacacgattgaat
atggtaacttatcaggtaggcagaacaggcgctgtaactcctgttgccaacttagatgct
gttcagctatccggaacggttgtcaaacgtgcttcattgcataatgcggatattatcgaa
gggcttgatctgcatatcggagatatggtttatgtagaaaaaggtggtgagatcattcct
aaaattacaggagtggataaagatgcccgtagttttatgcttggtgagaaggtcaggttt
attaccaattgccccgaatgtggcagcaaattaattagatatgaaggcgaagctgcccat
tattgtcctaatgaaactgcatgtccccctcagattaaaggtaaaatagagcattttatt
agtcggaaagccatgaatattgatggattgggtcctgaaacggtggatatgttctatcgt
ttggggttgattcataatacggcggatctgtatgaattgaaagccgatgatatcaaaggg
ttggatcgtatgggagaaaaatctgcagagaatattattacggggattgagcagagtaag
acagttccttttgaacgtgtcatctttgctttgggaattcggtttgttggcgagacggta
gcaaagaaaatagccaagtcgttcggggacattgacgagctgcgacaggctgaccttgaa
aagctgataagtatcgatgaaatcggggaaaaaatagcgcgaagcattcttctgtatttc
tcaaatgagtctaaccgagagttagttggcaggttaaaagaggctgggttacagctctat
cgtacagaagaagatatgagtggatatacggataaattagctggtcagtctattgtgatc
agcggtgtatttacgcatcattcacgggacgaatataaagaccttattgagaaaaatggc
ggtaagaatgtgggaagtatctctgctaagaccagttttatccttgccggtgacaatatg
gggccagccaaactggaaaaagcaaaaaaacttggagtaaccatactaagcgaggacgaa
tttctgaaacttatatcgtaa
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