Burkholderia thailandensis 2003015869: DR62_3207
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Entry
DR62_3207 CDS
T03763
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
btha
Burkholderia thailandensis 2003015869
Pathway
btha03030
DNA replication
btha03410
Base excision repair
btha03420
Nucleotide excision repair
btha03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
btha00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DR62_3207 (ligA)
03410 Base excision repair
DR62_3207 (ligA)
03420 Nucleotide excision repair
DR62_3207 (ligA)
03430 Mismatch repair
DR62_3207 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
btha03032
]
DR62_3207 (ligA)
03400 DNA repair and recombination proteins [BR:
btha03400
]
DR62_3207 (ligA)
Enzymes [BR:
btha01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
DR62_3207 (ligA)
DNA replication proteins [BR:
btha03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
DR62_3207 (ligA)
DNA repair and recombination proteins [BR:
btha03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
DR62_3207 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
DR62_3207 (ligA)
MMR (mismatch excision repair)
DNA ligase
DR62_3207 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
DR62_3207 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
MctB
5_3_exonuc
Zn_ribbon_8
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
AIP62266
LinkDB
All DBs
Position
1:complement(3246944..3249019)
Genome browser
AA seq
691 aa
AA seq
DB search
MARSPVEPSAGQPAKRAAWLRAELERANYAYYVLDQPDLPDAEYDRLFAELQQIEAEHPD
LVTPDSPTQRVGGEVASGFTPVVHDTPMLSLNNGFSDDDVVAFDKRVADGLDKPTDLVGT
VTEPVEYACELKFDGLAISLRYENGRFVQASTRGDGTTGEDVTENIRTVRSIPLTLKGKR
VPRMLDVRGEVLMFKRDFARLNERQRAAGQREFANPRNAAAGSLRQLDSKITASRPLSFF
AYGIGVLDGVEMPDTHSSLLDWYETLGLPVNRERAVVRGAAGLLEFFHSVGARRESLPYD
IDGVVYKVNRRDEQDRLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARL
EPVFVGGATVTNATLHNEDEVRRKDIRIGDTVIVRRAGDVIPEVVSAVLDRRPADAREFV
MPTECPECGSRVERLPDEAIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEKIIDQLV
EQNLVRTPADLFNLGFSTLVELDRFAEKSAQNLIDSLEKAKHTTLARFIYALGIRHVGES
TAKDLAKHFGSLDPIMDASIDELLEVNDVGPIVAESIHQFFAEAHNRTVIEQLRAKGKVT
WPEGPPAPRAPQGVLAGKTVVLTGTLPTLTREAAKEMLEAAGAKVAGSVSKKTDYVVAGA
DAGSKLAKAEELGIPVLDEAGMHKLLEGHAR
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atggcccgatccccagttgaaccgtccgccggccagccggcgaagcgcgccgcgtggctg
cgcgccgagctcgagcgggcgaactacgcatattacgtgctcgaccagccggacctgccc
gacgccgagtacgatcgcctcttcgccgaactccagcagatcgaggccgagcaccccgat
ctcgtcacgcccgattcgccgacgcagcgcgtcggcggcgaggtcgcgagcggcttcacg
ccggtcgttcacgatacgccgatgctgtcgctcaacaacggtttttccgacgacgacgtc
gtcgcgttcgacaagcgcgtcgccgacggcctcgacaagccgaccgacctcgtcggcacc
gtgaccgagcctgtcgaatacgcgtgcgagctgaagttcgacggcctggcgatctcgctg
cgctacgagaacggccgcttcgtgcaggcatcgacgcgcggcgacggcacgacgggcgaa
gacgtcaccgagaacatccgcacggtccgctcgattccgctgacgctcaagggcaagcgc
gtgccgcgcatgctcgacgtgcgcggcgaagtgctcatgttcaagcgcgatttcgcgcgc
ttgaacgagcgtcagcgcgcggcgggccagcgcgaattcgcgaatccgcgcaacgcggcg
gcgggcagcctgcggcagctcgattcgaagatcaccgcgtcgcggccgctttcgtttttc
gcctacgggatcggcgtgctcgacggcgtcgagatgcccgacacgcacagcagcctgctc
gactggtacgagacgctcgggctgccggtgaaccgcgagcgcgcggtcgtgcgcggcgcg
gcgggcctgctcgagttcttccattcggtgggcgcgcggcgcgagtcgctgccgtacgac
atcgacggcgtcgtctacaaggtgaatcgccgcgacgagcaggatcggctcggcttcgtg
tcgcgggcgccgcgcttcgcgctcgcgcacaagttccccgcgcaggaggcgctgacgaag
ctcgtcgcgatcgacgtgcaggtcggccgcacgggcgcgatcacgccggtcgcgcgtctc
gagcccgtgttcgtcggcggcgcgaccgtcacgaacgcgacgctgcacaacgaggacgag
gtgcgccgcaaggacatccggatcggcgacacggtcatcgtgcgccgcgcgggcgacgtg
attcccgaagtggtgtcggccgtgctcgatcggcgtcccgccgacgcgcgcgagttcgtg
atgccgaccgagtgcccggaatgcggttcgcgggtcgagcgattgcccgacgaggcgatc
gcgcgctgcacgggcgggctcttctgccccgcgcagcgcaagcaggcgctctggcacttc
gcgcagcgccgcgcgctcgacatcgacgggctcggcgagaagatcatcgatcagctcgtc
gagcagaacctcgtgcgcacgccggccgatctgttcaatctcggcttctcgacgctcgtc
gagctcgatcgttttgcggagaagtccgcgcagaacctgatcgactcgctcgaaaaggcg
aagcacacgacgctcgcgcgcttcatttacgcgctcggcatccggcacgtcggcgaatcg
acggcgaaggacctcgcgaagcacttcggctcgctcgatccgatcatggacgcgtcgatc
gacgaattgctcgaagtcaatgacgtcgggccgatcgtcgccgaatccatccatcagttc
ttcgccgaggcgcacaatcgcacggtgatcgagcaactgcgcgcgaagggcaaagtcacg
tggcccgaagggccgcccgcgccgcgcgcgccgcagggcgtgctcgcgggcaagaccgtc
gtgctgacgggcacgctgccgacgctcacgcgggaagccgcgaaggagatgctcgaggcg
gcgggcgcgaaggtcgcgggctcggtgtcgaagaagaccgattacgtcgtcgcgggcgcc
gacgcgggcagcaagctcgcgaaagccgaggaactcggcattccggtgctggacgaagca
ggcatgcacaaacttctggagggccatgcgcgatga
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