Bathymodiolus thermophilus thioautotrophic gill symbiont: MS2017_0424
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Entry
MS2017_0424 CDS
T07716
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bthg
Bathymodiolus thermophilus thioautotrophic gill symbiont
Pathway
bthg03030
DNA replication
bthg03410
Base excision repair
bthg03420
Nucleotide excision repair
bthg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bthg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MS2017_0424
03410 Base excision repair
MS2017_0424
03420 Nucleotide excision repair
MS2017_0424
03430 Mismatch repair
MS2017_0424
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bthg03032
]
MS2017_0424
03400 DNA repair and recombination proteins [BR:
bthg03400
]
MS2017_0424
Enzymes [BR:
bthg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MS2017_0424
DNA replication proteins [BR:
bthg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MS2017_0424
DNA repair and recombination proteins [BR:
bthg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MS2017_0424
NER (nucleotide excision repair)
GGR (global genome repair) factors
MS2017_0424
MMR (mismatch excision repair)
DNA ligase
MS2017_0424
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MS2017_0424
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_OB
DNA_ligase_aden
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
AYQ56168
UniProt:
A0A3G3IKC5
LinkDB
All DBs
Position
611499..613391
Genome browser
AA seq
630 aa
AA seq
DB search
MQKSFIQQIIQQDISLDDLTDEDLAQFCQTANLAYRAGEPIVSDKDYDFIYLAALKERLP
HHSLFQSVEPEGQGFSEEKVLLPEIMLSIDKAYSWQEISKWLERIQKSASIIDLANNKIQ
IKATPKLDGFAGYDDGKKLYTRGDGKKGSDISRVFERGLQIYNDSERGQGAGEIVVKKSY
FESHLSDDFEYPRNFQASLIKEKELDIKAQQAIDAKAALFVPFAQLPTKLVDMSELEGQF
TQIVDYILESVDFDVDGVVFAVTDDALKNCMGANRKFHRWQIAFKENRDKAQVKVLSVTP
QVGRTGKITPVAELEPTLLSGATIHRATGHHYGLVKEQGLGSGSIIELTRSGLVIPKINQ
VLKSAPTDIPAVCPSCSEPLQWESDFLMCINHQECPAQVIGKMAYFFKILANNDGFGIAT
IEKLYEQGIRKISEIYALNAERLMAMGFGEKTSSNLIGQLERSSAEQIEDWRFLAAFGVV
RLSIGNCENLLKAYPLSDIFALNIEKIAEIEGFAELTAHAIVTGLKSIKDEFELLSQRNF
NLELTHLQKDLVAFAHELNGKKVVFTGKMNTPREAMKKHAKSIGIQVATSVSAKTDYLII
GEKVGDKKIENAKKFGVEILTEEKYLAIVQ
NT seq
1893 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaaatcttttattcagcaaattattcagcaagacatttcactggatgatttaaca
gatgaagatttggcacaattttgtcaaactgccaatcttgcttatcgagcaggcgagcct
attgttagcgacaaggattatgattttatttatcttgctgcactcaaggaaagactacca
catcattcattatttcaatctgtagaaccagaagggcaaggtttttctgaagaaaaggtg
ttgctaccagaaattatgttgtctatcgataaggcgtattcgtggcaagaaataagcaaa
tggttggaacgcattcaaaaatctgcctccattatagaccttgctaataacaaaattcaa
atcaaagccacgcctaagttagatggctttgcaggttatgatgatggtaaaaaactatac
actagaggggatggcaaaaaaggcagtgatattagtcgtgtgtttgagcgtggattgcaa
atttataatgattctgagcgtgggcaaggtgcaggtgaaattgtggttaagaaaagttat
tttgaatctcatttgtctgatgactttgaatatccgcgcaattttcaagcaagccttatc
aaagaaaaagaacttgatattaaagcacaacaagcgattgatgctaaagctgctttgttt
gtgccttttgcccagttgccaaccaagttagttgatatgagtgaattagaggggcaattt
acacaaattgttgattacatattggaaagtgttgattttgatgtagatggcgtggtgttt
gcagtaaccgacgatgcgttgaaaaattgtatgggtgccaatcgaaagtttcatcgttgg
caaattgcttttaaagaaaatagagacaaggcacaagtcaaggttctgtcagttacccct
caagttggacgcacaggcaaaatcactcctgtggcagaattagagccaactttgcttagt
ggtgcaaccattcatcgtgcaacaggacatcattacggcttagttaaagagcaaggattg
ggcagtggctcaatcatcgagttaacccgttctggtttggttatccctaaaatcaatcaa
gttttaaaatcagcaccgaccgatattccagcagtttgcccaagttgtagcgaaccgttg
caatgggaatctgattttttaatgtgtattaatcaccaagaatgccccgcacaagttatt
gggaaaatggcgtatttttttaagatactcgccaataatgatggttttggcattgctact
attgaaaaattatacgaacaaggtattcgtaaaatttcagaaatttatgccttgaatgca
gagcgtttaatggcaatgggttttggcgaaaaaaccagtagcaatctaattgggcaatta
gaaaggtcaagcgccgagcagattgaagattggcgctttttagcagcattcggcgttgtt
agattgagcataggaaattgtgaaaacttactcaaagcctatccactcagtgatattttt
gcacttaatattgagaaaatagcggaaattgaaggttttgccgaactcactgcacatgct
attgttacaggacttaaaagcattaaagatgaatttgaattattaagccaacgcaatttt
aatttagaattaacgcatttgcaaaaagatttggtggcatttgcacatgaacttaacggt
aaaaaagtggtctttactggcaagatgaataccccaagagaggcgatgaaaaaacacgct
aaatctattggcattcaagtggcaaccagtgtaagcgcaaaaacagattatttgataata
ggtgaaaaagtaggggataaaaaaattgaaaatgcaaaaaaattcggcgtagaaatattg
actgaagaaaagtatttggcaatcgttcaataa
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