Bacteroides thetaiotaomicron 7330: Btheta7330_02526
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Entry
Btheta7330_02526 CDS
T04540
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
btho
Bacteroides thetaiotaomicron 7330
Pathway
btho03030
DNA replication
btho03410
Base excision repair
btho03420
Nucleotide excision repair
btho03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
btho00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Btheta7330_02526 (ligA)
03410 Base excision repair
Btheta7330_02526 (ligA)
03420 Nucleotide excision repair
Btheta7330_02526 (ligA)
03430 Mismatch repair
Btheta7330_02526 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
btho03032
]
Btheta7330_02526 (ligA)
03400 DNA repair and recombination proteins [BR:
btho03400
]
Btheta7330_02526 (ligA)
Enzymes [BR:
btho01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Btheta7330_02526 (ligA)
DNA replication proteins [BR:
btho03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Btheta7330_02526 (ligA)
DNA repair and recombination proteins [BR:
btho03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Btheta7330_02526 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Btheta7330_02526 (ligA)
MMR (mismatch excision repair)
DNA ligase
Btheta7330_02526 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Btheta7330_02526 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
BRCT_2
SpoOE-like
Pentapeptide
Motif
Other DBs
NCBI-ProteinID:
ALJ42072
UniProt:
A0A0P0FLW2
LinkDB
All DBs
Position
3077639..3079639
Genome browser
AA seq
666 aa
AA seq
DB search
MDIKEKIEELRAELHRHNYNYYVLNAPEISDKEFDDKMRELQDLELAHPEYKDENSPTMR
VGSDISKNFTQVAHKYPMLSLANTYSESEVTDFYERVRKALNEDFEICCEMKYDGTSISL
TYEDGKLVRAVTRGDGEKGDDVTDNVKTIRSIPLVLHGDNYPSSFEIRGEILMPWEVFEE
LNREKEAREEPLFANPRNAASGTLKLQNSSIVASRKLDAYLYYLLGDNLPCDGHYENLQE
AAKWGFKISDLTRKCQTLEEVFEFINHWDVERKNLPVATDGIVLKVNSLRQQKNLGFTAK
SPRWAIAYKFQAERALTRLNMVTYQVGRTGAVTPVANLDAVQLSGTIVKRASLHNADIIE
GLDLHIGDMVYVEKGGEIIPKITGVDKDARSFMLGEKVRFITNCPECGSKLIRYEGEAAH
YCPNETACPPQIKGRIEHFISRKAMNIDGLGPETVDMFYRLGLIHNTADLYELKADDIKG
LDRMGEKSAENIITGIEQSKTVPFERVIFALGIRFVGETVAKKIAKSFGDIDELQQADLE
KLISIDEIGEKIARSILLYFSNESNRELVGRLKEAGLQLYRTEEDMSGYTDKLAGQSIVI
SGVFTHHSRDEYKDLIEKNGGKNVGSISAKTSFILAGDNMGPAKLEKAKKLGVTILSEDE
FLKLIS
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
atggatataaaggaaaaaatagaggaattgcgtgctgaacttcatcggcataactataat
tattacgttttgaatgctcccgaaatttcagataaggagtttgatgataagatgcgtgaa
ctccaggatctggagctggcacatccggaatataaagatgaaaattcgcccactatgcgt
gtcggcagtgacattagcaagaatttcacgcaggttgcgcataaataccctatgttgtct
ttggcaaatacatactctgaaagcgaagttacagatttttatgagcgtgtacgaaaagcg
ttgaatgaggattttgagatttgctgtgagatgaaatatgatggtacttccatttctctg
acctacgaagatggaaaactggttcgtgccgttacacgcggagatggagaaaagggcgat
gatgtgacagataatgtaaagacaatccgttctattccacttgtgctccatggtgacaat
tatccttcttcttttgagattcgtggggaaattcttatgccctgggaagtatttgaggag
ttgaaccgcgaaaaagaagcacgtgaggagccacttttcgctaatccgagaaatgcagcc
tcaggaacattgaagcttcagaattcttctattgtagcttctcgcaagctggatgcgtat
ttatattatcttttgggagataatctgccttgtgacggacattatgaaaatcttcaggaa
gccgcaaaatggggatttaaaatctctgatttgacgcgtaaatgccagacgttggaagag
gtttttgaatttatcaatcattgggatgtagaacgaaagaatctgcctgtagctactgat
ggaatcgtcttgaaggtaaatagtctgagacaacaaaagaatcttggttttacggcgaaa
tcacccagatgggcaattgcctataaatttcaggcagaacgtgcattgacacgattgaat
atggtaacttatcaggtaggcagaacaggcgctgtaactcctgttgccaacttagatgct
gttcagctatccggaacgattgtcaaacgtgcttcattgcataatgcggatattattgaa
gggcttgatttgcatatcggagatatggtttatgtagaaaaaggtggcgagatcattcct
aaaattacaggagtggataaagatgcccgtagctttatgcttggtgagaaggtcaggttt
attaccaattgccccgaatgtggcagcaaattaattagatatgaaggcgaagctgcccat
tattgtcctaatgaaactgcatgtccccctcagattaaaggtagaatagagcattttatt
agtcggaaagccatgaatattgatgggttgggtcctgaaacggtggatatgttctatcgt
ttaggattgattcataatacggcggatttgtatgaattgaaagccgatgatatcaaaggg
ttggatcgtatgggagaaaaatctgctgagaatattattacggggattgagcagagtaag
acagttccttttgaacgcgtcatctttgctttgggaattcggtttgttggcgagacggta
gcaaagaaaatagccaagtcgttcggagacattgacgagctgcaacaggctgaccttgaa
aagctgataagtatcgatgaaatcggggaaaaaatagcgcgaagcattcttctgtatttc
tcaaatgagtctaaccgagagttagttggcaggttaaaagaggctgggttacagctctat
cgtacagaagaagatatgagtggatatacggataaattagccggtcagtctattgtgatc
agcggcgtatttacgcatcattcacgggacgaatataaagaccttattgagaaaaatggc
ggtaagaatgtgggaagtatctctgctaagaccagttttatccttgccggtgacaatatg
gggccagccaaactggaaaaagcaaaaaaacttggagtaaccatactaagcgaggacgaa
tttctgaaacttatatcgtaa
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integrated database retrieval system
