Brochothrix thermosphacta: CNY62_09075
Help
Entry
CNY62_09075 CDS
T05089
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bths
Brochothrix thermosphacta
Pathway
bths03030
DNA replication
bths03410
Base excision repair
bths03420
Nucleotide excision repair
bths03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bths00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CNY62_09075 (ligA)
03410 Base excision repair
CNY62_09075 (ligA)
03420 Nucleotide excision repair
CNY62_09075 (ligA)
03430 Mismatch repair
CNY62_09075 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bths03032
]
CNY62_09075 (ligA)
03400 DNA repair and recombination proteins [BR:
bths03400
]
CNY62_09075 (ligA)
Enzymes [BR:
bths01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CNY62_09075 (ligA)
DNA replication proteins [BR:
bths03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CNY62_09075 (ligA)
DNA repair and recombination proteins [BR:
bths03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CNY62_09075 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CNY62_09075 (ligA)
MMR (mismatch excision repair)
DNA ligase
CNY62_09075 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CNY62_09075 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
HHH
Nlig-Ia
PTCB-BRCT
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
ATF26528
UniProt:
A0A1D2LXL3
LinkDB
All DBs
Position
1880441..1882453
Genome browser
AA seq
670 aa
AA seq
DB search
MNERLDELKQRLHELSYAYYVLDNPVAEDGEYDALYAELVTIETAHPELVTEDSPTQRIG
GVVLDKFEKVPHDVPMLSMGDVFNEEEIRQFDQRVRKELEVDQVDYTVELKIDGLALSLK
FEEGRLVQGATRGNGTIGENITANVKTIRSVPLKLREPLTIEIRGEAYMPKRSFAKLNES
REEEGLALFANPRNAAAGSLRQLDTKIAASRNLDTFLYAVANPSVLNVERHSEMLAAIEK
IGCHVNNEFKVVHSIEGVMEYIAKWTEKRNQLPYDIDGIVIKVDRFDYQRQLGATVKVPR
WMIAYKFPAEEQSTRLIDIELSIGRTGVVTPTAILNPVQLAGTTVQRASLHNADYINGKD
IRINDEVIVKKAGDIIPEVVRVLIEKRPADSEPYVMPTHCPSCESELVRLDDEVALRCIN
PKCGAQIREGLIHFASRNAMNIEGLGDKVVSQLHEHHLIADVADLYKLQMEDLLPLERMG
EKSATKLLAAIETSKANSLEMLLFGLGIRHVGAKAAKSLAQHFGEIEALQTATVEELISI
DDVGGIMADSIVTYFSNPQVVELIEELRQVNVNLTYTGPSLANKSADELVFNGQTVVLTG
KLEHMTRNEAQLLIESLGGKVTGSVSKKTDVVVAGTDAGSKRTKAESLQIPIWSEADLRV
YLKDEGDQKL
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaacgtttagatgaattaaaacaacgattacacgagctgagttatgcgtattat
gtgctggataaccccgtcgcagaagatggcgaatatgatgcgttatatgcggaacttgta
acaattgaaacagcccatccagagcttgtaacagaagattctcccacgcaacgcatcggt
ggtgttgtactagataagtttgaaaaagtgccacacgatgtaccgatgttaagcatgggt
gatgtgtttaacgaggaggaaattcgtcaatttgatcaacgtgttcgtaaagagcttgaa
gtggatcaagttgattatacagtggagcttaaaattgatggtctagcgttatcgcttaaa
ttcgaagagggtcgcttggtacaaggtgctactcgtggtaatggtaccatcggagagaat
ataactgccaatgtaaaaacaatccgttcagtgccattgaaattacgtgagcccttaacc
attgaaatacgtggggaagcctatatgccaaaacgctctttcgccaaattgaacgaaagt
cgtgaagaagaaggcttggcactttttgctaatcctcgtaatgcagccgcaggttcatta
cgtcaattagacactaaaattgcagcttcaagaaatcttgacacctttttatatgcggtc
gctaatccctctgttttaaatgtagaacgacacagtgagatgttagcggcaatagaaaaa
attggctgtcatgtgaataatgaattcaaagtggttcattcgattgaaggtgtgatggag
tatatcgcgaagtggacagaaaaacgtaatcaattaccgtatgatattgatgggattgtt
attaaagttgatcgttttgattaccaacgtcaactcggtgccacggtaaaagtaccgcga
tggatgattgcttataaattcccagccgaagaacaatcaacacgtttaattgatattgag
ctaagcattggtcgtacgggtgttgttacaccgactgcgattttaaatcccgtacagcta
gcaggaacgacagttcaacgtgcttctttacataatgctgactacattaacgggaaagat
attcgtataaatgatgaagtaatcgtaaaaaaagcaggggatattattccagaagtggtg
cgagtcctaatcgaaaagcgaccagctgatagtgaaccttatgtgatgcccactcattgt
ccttcatgcgaaagcgaattggtccgcttagatgatgaagtcgcactacgctgtattaat
cctaaatgtggggcacaaattcgcgaaggtttgattcactttgcttcccgtaatgctatg
aatattgagggacttggcgataaggttgtttcacaattacatgaacatcacttaatcgct
gatgttgccgatttatacaaattacaaatggaagatttattgccattggagcgtatgggt
gaaaaatcagcaacaaaattattagctgccattgaaacatcaaaagccaattcattagaa
atgttactatttggcctcggtattcgtcatgtcggtgcaaaagctgcgaagtcacttgca
caacattttggagaaattgaggcgttacaaacagcaacggtagaagaattaattagtatt
gatgatgttggtggtattatggccgattcaatcgtaacttattttagcaatccgcaagtg
gtcgaattgattgaagaactgcgtcaggtcaacgttaatttaacttataccggaccgtct
ttagcaaataaatcagcggatgagctagtttttaatggtcaaacagtagtgttaactggt
aaactagagcatatgacacgcaatgaagctcaattactaattgaaagcctcggtggcaag
gtaacaggcagcgtcagtaaaaaaacagatgttgttgttgcaggaaccgatgcaggctct
aagcgaacaaaagctgagagtctacagattccaatttggtctgaagcggacttacgcgtg
tacttaaaagatgaaggtgaccaaaaactatga
DBGET
integrated database retrieval system
