Bacillus thuringiensis YBT-1518: YBT1518_01695
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Entry
YBT1518_01695 CDS
T02930
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bthu
Bacillus thuringiensis YBT-1518
Pathway
bthu03030
DNA replication
bthu03410
Base excision repair
bthu03420
Nucleotide excision repair
bthu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bthu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
YBT1518_01695 (ligA)
03410 Base excision repair
YBT1518_01695 (ligA)
03420 Nucleotide excision repair
YBT1518_01695 (ligA)
03430 Mismatch repair
YBT1518_01695 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bthu03032
]
YBT1518_01695 (ligA)
03400 DNA repair and recombination proteins [BR:
bthu03400
]
YBT1518_01695 (ligA)
Enzymes [BR:
bthu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
YBT1518_01695 (ligA)
DNA replication proteins [BR:
bthu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
YBT1518_01695 (ligA)
DNA repair and recombination proteins [BR:
bthu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
YBT1518_01695 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
YBT1518_01695 (ligA)
MMR (mismatch excision repair)
DNA ligase
YBT1518_01695 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
YBT1518_01695 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
RNA_pol_A_CTD
HHH
PTCB-BRCT
BRCT_2
5_3_exonuc
Nlig-Ia
DUF5395
Motif
Other DBs
NCBI-ProteinID:
AHA69569
UniProt:
A0A9W3KCZ6
LinkDB
All DBs
Position
382695..384704
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AA seq
669 aa
AA seq
DB search
MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRDMQELIKLEAENPEFMSEDSP
SVRVGGTILDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVCQGIDGANVRYICELKIDGL
AVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIPLRLNEEVTLEARGEAYMPKRSFV
KLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEKTIPSHSESL
DFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDVALQESLGTT
AKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRRASLHNEDL
IREKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYRMPTHCPACESELVRLEEEVA
LRCINPTCPAQIREGLIHFVSRNAMNIDGLGERVITQLFDADYIRTFADLYALTKEQLLQ
LERFGEKSATNLIQAIENSKENSLERLLFGLGIRHVGAKAARTFAEHFETMDELVKATEE
ELKAINEIGEKMAQSVVTYFDNEDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKT
VVLTGKLEVMGRSEAKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNE
ERFLQELNK
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaagagatagcaaaaaaacgtatagaagaactgcgtgatttgttaaatacattt
aattatcaatatcacgtattagacaatccttctgtttctgatgcggaatatgaccgtgat
atgcaggagcttataaaattagaagcagagaacccagagtttatgagtgaagattctccc
tccgttcgcgttgggggaactattcttgatatatttgaaaaagtaacacataagtcacca
atgttaagtttagggaatgcatttaacgaaggggatttgcgtgatttcgacagaagagta
tgtcaaggaattgatggtgcgaatgtaagatatatatgtgaattaaaaattgacgggctt
gccgtttcgcttcattatgaaaaaggacgcttcattcaaggggcgacacgtggtgatggt
gtaacgggtgaagatattactcaaaatttaaaaacgattaaagctatcccacttcgttta
aatgaagaagtaacgttagaagcacgaggcgaagcttatatgccgaagcgttcattcgtt
aaactaaatgaagaaaaagagcaaaatggagaagatgtatttgcgaatccgcgtaatgca
gcagcaggttcaatacgtcaacttgatccgaaaattgcagcgaagcgtaacttatctatg
tttgtgtacggtcttgcgaatgtagaagaaaaaacaattccatcgcacagtgaatcgctt
gatttcttaggtgaactcggatttaagacaaatccaaatcgccgtacatgtgaaacaatc
gaagaggttatagcttatgtagaagaatggcaagaaaaacgtccgcatcttgattatgag
attgatggaatcgttataaaagtagatgatgttgctcttcaagaaagtctaggaactaca
gcgaagagtccacgatgggcgattgcttataaattcccagctgaagaagttgtaacgaga
ctaacaggcattgaattaagtgttggccgaacaggagttgtaacgccgactgcagagcta
gagccagtgagagttgctggtacgattgttcgccgtgcttctttacataacgaagatttg
attcgtgaaaaagacattcgaattggtgactacgttgttgtgaagaaggctggagatatt
attcctgaagttgtgaacgttatttttgataagcgtactggtgaagaagaagaataccgt
atgccaacgcattgtccagcatgtgagagtgaacttgttcgtttagaagaagaagtagca
cttcgatgtataaatccgacttgtccggctcaaattcgagagggattaatccatttcgtt
tcaagaaatgcgatgaatattgatggacttggagaacgtgtcattacacaactctttgat
gcagattatattcgtacatttgctgatttatatgcattgacgaaagagcaattattacag
ttagaacgttttggtgaaaaatcagcaacaaacttaatacaagcaattgaaaattctaaa
gaaaactcgttagagcgattattatttggtcttggaattcgccacgttggagcgaaagca
gcacgtacatttgcagagcactttgaaacgatggatgagcttgtaaaagcaacagaagaa
gaactaaaagcaattaatgaaattggcgaaaaaatggctcaatctgttgtgacatatttt
gataatgaagatgtattagaattattacagcagtttaaagagtatggcgtgaatatgaca
tacaaaggtataaaaattgcagatttacaaaatgttgaatcttacttcgcaggaaaaacg
gttgttttaacaggtaagctagaagttatgggacgaagtgaagcgaagaagaagattgag
gcattaggtggaaaagtaacaggaagtgttagtaagagtacggatttggttgttgcaggt
gaagcagctggttcgaaattagcacaagcggagaaacataatgttgaggtttggaatgaa
gagaggttcttacaagagctaaataagtaa
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