Bacillus thuringiensis serovar konkukian 97-27: BT9727_0276
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Entry
BT9727_0276 CDS
T00179
Symbol
ligA
Name
(GenBank) DNA ligase(NAD+) (NAD-dependent DNA ligase)
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
btk
Bacillus thuringiensis serovar konkukian 97-27
Pathway
btk03030
DNA replication
btk03410
Base excision repair
btk03420
Nucleotide excision repair
btk03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
btk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BT9727_0276 (ligA)
03410 Base excision repair
BT9727_0276 (ligA)
03420 Nucleotide excision repair
BT9727_0276 (ligA)
03430 Mismatch repair
BT9727_0276 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
btk03032
]
BT9727_0276 (ligA)
03400 DNA repair and recombination proteins [BR:
btk03400
]
BT9727_0276 (ligA)
Enzymes [BR:
btk01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BT9727_0276 (ligA)
DNA replication proteins [BR:
btk03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BT9727_0276 (ligA)
DNA repair and recombination proteins [BR:
btk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BT9727_0276 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BT9727_0276 (ligA)
MMR (mismatch excision repair)
DNA ligase
BT9727_0276 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BT9727_0276 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
RNA_pol_A_CTD
HHH
PTCB-BRCT
BRCT_2
Nlig-Ia
HHH_3
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
AAT61280
UniProt:
Q6HP94
LinkDB
All DBs
Position
327647..329656
Genome browser
AA seq
669 aa
AA seq
DB search
MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFMSEDSP
SVRVGGTVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVRQGIDDANVRYICELKIDGL
AVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIPLRLNEEVTLEARGEAYMPKRSFV
KLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEKTIPSHSESL
DFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDVALQESLGTT
AKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRRASLHNEDL
IREKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYHMPTHCPACESELVRLEEEVA
LRCINPTCPAQIREGLIHFVSRNAMNIDGLGERVITQLFDADYIRTFADLYSLTKEQLLQ
LERFGEKSATNLVQAIENSKENSLERLLFGLGIRHVGAKAARTFAEHFETMDALVKATEE
ELKAINEIGEKMAQSVVAYFDNEDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKT
VVLTGKLEVMGRSEAKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNE
ERFLQELNK
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaagagatagcaaaaaaacgtatagaagaactacgtgatttgttaaatacattt
aactatcaatatcacgtattagacaatccttctgtttctgatgcggagtacgaccgtaat
atgcaggagcttataaaattagaagcagagaatccagagtttatgagtgaagattctccc
tccgttcgcgttggggggacggttcttgatatatttgaaaaagtaacacataagtcaccg
atgttaagtttaggaaatgcatttaacgaaggggatttacgtgattttgaccgacgagta
cgtcaaggaattgatgatgcgaatgtaagatatatatgcgaattaaaaattgacggactt
gctgtttcacttcattatgaaaaaggacgcttcattcaaggggcaacacgtggtgatggt
gtaacaggtgaagatattacccaaaatttaaaaacgattaaagcaatcccgcttcgttta
aatgaagaagtaacgttagaagcacgaggcgaagcttatatgccgaagcgttcattcgtt
aagttaaatgaagaaaaagagcaaaatggtgaagatgtatttgcgaatccgcgtaatgcg
gcagcaggttcaatccgccaacttgatccgaaaattgcagcgaagcgtaacttatctatg
tttgtatatggtcttgcgaatgtagaagaaaaaacaattccatcacatagtgaatcgctt
gatttcttaggtgaacttggattcaaaacaaatccaaatcgtcgtacatgtgaaacaatt
gaagaagttatagcttatgtagaagaatggcaagaaaaacgtccacatcttgattatgag
attgatgggatcgttataaaagtagacgatgttgctcttcaagaaagtctaggaactaca
gcaaagagtccaagatgggcgattgcttataaattcccagcggaagaagttgtaacaaga
ttaacgggcattgaattaagtgttggtcgtacaggggttgtaacaccgactgcagagcta
gagccagtgcgagtggctggtacgatcgttcgtcgtgcttctttacataacgaagattta
attcgtgaaaaagatattcgaattggtgactacgttgttgtgaagaaagctggagatatt
attcctgaagttgtaaatgttatttttgataagcgtactggtgaggaagaagaatatcat
atgccaacgcattgcccagcatgtgagagtgaactagttcgtttagaagaagaggtagca
cttcgttgtataaatccaacttgtcctgctcaaattcgagaaggattaatccatttcgtt
tcaagaaatgcaatgaatattgatggtcttggagaacgtgtcattacacaactctttgat
gctgattatattcgtacatttgcggatttatattcgttgacgaaagagcaattattacag
ttagaacgattcggagaaaaatcagcaacgaatttagtacaagcaattgagaattctaaa
gaaaactcattagagcgattattattcggtcttggtattcgccatgtcggagcgaaagca
gcacgtacatttgcagagcatttcgaaacgatggatgcacttgtgaaagcgacggaagaa
gaattaaaagcaattaacgagattggtgaaaaaatggctcaatccgtcgtggcgtatttt
gataatgaagacgtattagagctattacaacaatttaaagagtatggcgtgaatatgaca
tacaaaggtataaaaattgctgatttacaaaatgttgagtcatactttgcaggaaaaact
gtcgttttaactgggaaattagaagttatgggacgtagtgaagcgaagaagaagattgag
gcattaggtggaaaagtaacaggaagtgttagtaaaagtacggatttagttgtcgcaggt
gaagcggcaggttcgaaattagcacaagcggagaaacataatgttgaggtttggaatgaa
gagaggttcttacaagagctaaataagtaa
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