Bacillus thuringiensis MC28: MC28_5021
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Entry
MC28_5021 CDS
T02263
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
btm
Bacillus thuringiensis MC28
Pathway
btm03030
DNA replication
btm03410
Base excision repair
btm03420
Nucleotide excision repair
btm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
btm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MC28_5021 (ligA)
03410 Base excision repair
MC28_5021 (ligA)
03420 Nucleotide excision repair
MC28_5021 (ligA)
03430 Mismatch repair
MC28_5021 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
btm03032
]
MC28_5021 (ligA)
03400 DNA repair and recombination proteins [BR:
btm03400
]
MC28_5021 (ligA)
Enzymes [BR:
btm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MC28_5021 (ligA)
DNA replication proteins [BR:
btm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MC28_5021 (ligA)
DNA repair and recombination proteins [BR:
btm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MC28_5021 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MC28_5021 (ligA)
MMR (mismatch excision repair)
DNA ligase
MC28_5021 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MC28_5021 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
RNA_pol_A_CTD
Nlig-Ia
HHH
PTCB-BRCT
BRCT_2
RNA_ligase
5_3_exonuc
HHH_3
Motif
Other DBs
NCBI-ProteinID:
AFU16443
LinkDB
All DBs
Position
4948474..4950483
Genome browser
AA seq
669 aa
AA seq
DB search
MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFMSEDSP
SVRVGGTVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVRQGIDDANVRYICELKIDGL
AVSLHYEKGRFIQGATRGDGITGEDITQNLKTIKAIPLRLNEEVTLEARGEAYMPKRSFV
KLNEEKEQNGEDVFANPRNAAAGSIRQLDTKIAAKRNLSMFVYGLANVEEKTISSHSESL
DFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPNLDYEIDGIVIKVDDVALQESLGTT
AKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRRASLHNEDL
IREKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYRMPTHCPACESELVRLEEEVA
LRCINPTCPAQIREGLIHFVSRNAMNIDGLGERVITQLFDADYIRTFADLYALTKEQLLQ
LERFGEKSATNLIQAIENSKENSLERLLFGLGIRHVGAKAARTFAEHFETMDALVKATEE
ELKSINEIGEKMAQSVVTYFDNEDVLELLQQFKEYGVNMTYKGIKSADLQNVESYFAGKT
VVLTGKLEVMGRSEAKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNE
ERFLQELNK
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaagagatagcaaaaaaacgtatagaagaactacgtgatttgttaaatacattt
aactatcaatatcacgtattagacaatccttctgtttctgatgcggagtatgaccgtaat
atgcaggagcttataaaattagaagcagagaatccagagttcatgagtgaagactctccc
tccgtgcgcgttgggggaactgttcttgatatatttgaaaaagtaacgcataagtcaccg
atgttaagtttaggaaatgcatttaacgaaggagatttgcgtgattttgaccgaagagta
cgtcaaggaattgatgatgcgaatgtaagatatatatgcgaattaaaaattgacggactt
gctgtttcacttcattatgaaaaaggacgctttattcaaggtgcaacacgtggtgatggt
ataacaggtgaagatattacccaaaacttgaaaacgattaaagcaattccacttcgatta
aatgaagaggtaacgttagaagcgcgaggcgaggcttatatgccgaagcgttcattcgtt
aaactaaatgaagaaaaagagcaaaacggtgaagatgtatttgcgaatccgcgtaatgcg
gcagcaggttcaatacgtcaacttgatacgaaaattgcagcaaagcgtaacctatccatg
tttgtatatggtcttgcaaatgtagaagaaaaaacaatttcatcgcatagcgaatcactt
gatttcttaggtgaactggggtttaagacgaatccaaatcgccgtacatgtgaaacaatt
gaagaggttatagcttatgtagaagaatggcaggaaaaacgtccgaatcttgattatgag
attgatgggatcgttataaaagtagacgatgttgctcttcaagaaagcctaggaactact
gcaaagagtccaagatgggcgattgcttataaattcccggctgaagaagttgtaacgaga
ttaacgggcattgaattaagtgttggccgtacaggggttgtaacaccgactgcagagtta
gaaccagtacgagtggctggtacgatcgttcgtcgtgcttccttacataacgaggattta
attcgtgaaaaagacattcgaattggtgactacgttgttgtgaaaaaggctggagatatt
attcctgaagttgtgaacgttatttttgataagcgtactggtgaggaagaagaataccgc
atgccaacgcattgtccggcatgtgagagtgaactagttcgtttagaagaagaggttgca
cttcgttgtataaatccaacttgtcctgcccaaattcgcgagggattaattcatttcgtt
tcaagaaatgcaatgaatattgacggacttggcgagcgtgtcatcacacagctctttgat
gcagattatattcgtacgtttgcagatttatatgcattgacgaaagaacaattactacag
ctagagcgttttggtgaaaaatcagcaacaaatttaatacaagcaattgagaattcgaag
gaaaactcgttagagcgattattatttggccttggaattcgccatgtcggagcgaaagca
gcacgtacatttgcagagcattttgaaacgatggatgcacttgtgaaagcgacggaagag
gagctaaaatcaattaatgaaattggtgaaaaaatggcgcaatccgttgtgacatatttt
gataatgaagatgtattagagctattacaacagtttaaagagtatggcgtgaacatgaca
tacaaaggcataaaaagtgcagatttacaaaatgttgaatcttactttgcagggaaaact
gtcgtcttaactgggaaattagaagtgatgggacgcagtgaagcgaagaagaagattgag
gcattaggtggaaaagtaacaggaagtgttagtaaaagtacggatttagttgttgctggt
gaagctgctggctcaaaattagcgcaagcagagaagcacaatgttgaagtttggaatgaa
gagaggttcttacaagagctaaataagtaa
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integrated database retrieval system
