Bartonella tribocorum CIP 105476: BT_1581
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Entry
BT_1581 CDS
T00636
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
btr
Bartonella tribocorum CIP 105476
Pathway
btr03030
DNA replication
btr03410
Base excision repair
btr03420
Nucleotide excision repair
btr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
btr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BT_1581 (ligA)
03410 Base excision repair
BT_1581 (ligA)
03420 Nucleotide excision repair
BT_1581 (ligA)
03430 Mismatch repair
BT_1581 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
btr03032
]
BT_1581 (ligA)
03400 DNA repair and recombination proteins [BR:
btr03400
]
BT_1581 (ligA)
Enzymes [BR:
btr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BT_1581 (ligA)
DNA replication proteins [BR:
btr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BT_1581 (ligA)
DNA repair and recombination proteins [BR:
btr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BT_1581 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BT_1581 (ligA)
MMR (mismatch excision repair)
DNA ligase
BT_1581 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BT_1581 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HHH_RecD2
CwsA
Motif
Other DBs
NCBI-ProteinID:
CAK01920
UniProt:
A9IW95
LinkDB
All DBs
Position
complement(1685244..1687403)
Genome browser
AA seq
719 aa
AA seq
DB search
MNKDGIKNLTVVEAERELEWLAKEIARHDVLYNRDDQPEISDAEYDALRRRNAEIEALFP
ELIRVDSPSHKIGAAISEKFEKSVHAQPMLSLDNAFSAEDVYEFVERIRRFLRLPETQVL
EITAEPKIDGLSLSLRYEKGRLVRAATRGDGTVGENVTANARTIADIPQVLQGDFPDVIE
VRGEVYMGREDFQALNISQQEKGKLTFANPRNAAAGSLRQLDSRITASRKLQFFAYACGE
VSEIFAESQMEMMTKLKEYGFVINPLTKVFKTVEDIISYYRDIEERRYSLNYDIDGIVYK
VNDLMLQKRLGFVSRSPRWAIAHKFPAEKAMALLEDIDIQVGRTGALTPVARLTPITIGG
VVVTNASLHNEDYIKGIGHKGEPIREGRDIRIGDTVIIQRAGDVIPQVVDIVLEKRQKDS
SAFVFPDLCPACGSHAVREVGEAVRRCTGGLICPAQAIERIRHFVARNAFDIEGLGKKQV
EFFFHAQDEALCIHTPADIFTLERRQEKSLIRLENIEGFGTVSVRKLYDAINARREIPLS
RFLFALGIRHVGEVNARRLARAYQTYTAFETAAMEALMPCKQDNKEGNEAWMELTNIEGI
GPQVGSAIVDFYQEAHNREVLAVLLEEITPLDEVPIMTASSPIAEKIIVFTGTLAHMSRD
EAKALAERLGAKTSGSLSKKTDLLVAGPGAGSKLTKAQEFGVQVIDEEAWMRLIKGHNI
NT seq
2160 nt
NT seq
+upstream
nt +downstream
nt
atgaacaaggacggaattaaaaacctcacggttgttgaagcagaacgtgaattagaatgg
ttggcaaaagagattgcacgtcatgatgtgctttataatcgtgatgatcagcctgaaatt
tctgatgcagaatatgatgctttacgccgccgtaatgcagaaattgaagctctctttcca
gagcttattcgtgtcgattctccttcacataaaattggggcagcaatttctgaaaagttt
gaaaaatctgttcatgcacaaccgatgctttcacttgataatgcctttagtgctgaagat
gtgtacgaatttgttgagcgtattcgtcgttttttacggcttccagaaacacaagtgttg
gaaataacggcggagcccaaaattgatggtttatctttgtctttacgctacgaaaagggg
cgacttgtgcgtgcggcaacgcgtggggatggaactgttggtgaaaatgtgacggcaaat
gctcgaacaattgctgatattccacaagttttgcaaggtgattttcctgatgtcattgag
gtgcgtggtgaagtttatatgggacgggaagatttccaagctcttaatataagccaacaa
gagaagggaaagttaacttttgctaatcctcgaaatgcagcggctggttcgctccgtcag
cttgattcacggataaccgccagcagaaagcttcaattttttgcttatgcttgtggtgaa
gtgagtgaaatatttgcagaaagtcaaatggagatgatgacaaagctaaaagagtatggc
tttgttatcaatccattaacaaaagtctttaagacagtcgaagatattatttcctattat
cgtgatatcgaagagcgccgttattctttaaactatgatattgatggtattgtttataag
gttaatgatttgatgctccaaaagcgtttgggatttgtttctcgttcaccacgttgggcg
atagcgcacaaatttccagcagaaaaagcgatggcgcttttggaagacattgacattcaa
gtcggtcgtacgggagctttgacgcctgttgcacgtcttacgcctattactattggtggg
gtggtggtgaccaatgccagtttgcataatgaggattatattaaaggaattggtcataaa
ggggagcccattcgtgaagggcgcgatattcgtataggcgatacggtgattatacaacgt
gctggtgatgtcattcctcaagttgttgatattgttttggaaaaacgccaaaaagactct
tctgcttttgtttttcctgatctctgtcctgcttgtgggagtcatgctgttcgtgaagtg
ggagaagcagtgcgtcgttgtacgggggggcttatttgtcctgcacaggcgattgagcgt
attcgtcattttgttgctcgcaatgcttttgatattgaagggcttgggaaaaaacaggta
gagttttttttccatgctcaagatgaggcgctttgtattcatacaccagctgatattttt
actttagaacggcgccaagaaaagtctctgatacgtttggaaaatatagaagggtttggg
actgtttcagttcggaaattgtatgatgccattaatgcacgccgcgaaattcctttaagc
cgttttttgtttgcattgggaattcgtcatgttggagaggtgaatgcacgtcgccttgca
cgggcttatcaaacttatacagcctttgaaacggcggcgatggaagcacttatgccatgt
aaacaggataataaagaaggcaatgaagcttggatggagcttaccaatattgaaggaatt
ggaccacaggtagggagcgcaattgttgatttttatcaagaagcgcataatcgtgaagtt
ttagctgttttgcttgaagaaataacccctctcgatgaagtacctatcatgacagcttct
tcaccaatagcggagaagattattgtttttacaggaactttagcacatatgtcacgtgat
gaggcaaaagcattggcagagcgattaggggcaaagacttcaggttcactttctaaaaaa
acagatcttcttgttgcagggcctggtgcgggatcaaaattgactaaagcacaagaattt
ggtgttcaggttatcgatgaagaggcttggatgcggttgattaaggggcataatatttaa
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