Bordetella trematum: SAMEA390648702516
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Entry
SAMEA390648702516 CDS
T04322
Symbol
dnaL
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
btrm
Bordetella trematum
Pathway
btrm03030
DNA replication
btrm03410
Base excision repair
btrm03420
Nucleotide excision repair
btrm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
btrm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SAMEA390648702516 (dnaL)
03410 Base excision repair
SAMEA390648702516 (dnaL)
03420 Nucleotide excision repair
SAMEA390648702516 (dnaL)
03430 Mismatch repair
SAMEA390648702516 (dnaL)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
btrm03032
]
SAMEA390648702516 (dnaL)
03400 DNA repair and recombination proteins [BR:
btrm03400
]
SAMEA390648702516 (dnaL)
Enzymes [BR:
btrm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SAMEA390648702516 (dnaL)
DNA replication proteins [BR:
btrm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SAMEA390648702516 (dnaL)
DNA repair and recombination proteins [BR:
btrm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SAMEA390648702516 (dnaL)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SAMEA390648702516 (dnaL)
MMR (mismatch excision repair)
DNA ligase
SAMEA390648702516 (dnaL)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SAMEA390648702516 (dnaL)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
SAI70843
UniProt:
A0A157N6B0
LinkDB
All DBs
Position
1:2650619..2652706
Genome browser
AA seq
695 aa
AA seq
DB search
MAGREQAAQRVAALRHEIEQHNVRYYVYDEPSIPDAEYDRLMGELTALETEHPELVTPDS
PTQRVGAAPLAEFGSVQHAVPMLSLGNGFDDEDVLAFDKRVGDTLRGAGLLGPAEAARYF
CELKLDGLAITLRYEDGELVQAATRGDGQTGEDVTANIRTIKAIPLRLKGPAPEVLEVRG
EVLMNRSDFERLNQKQAARDEKVFVNPRNAAAGSLRQLDPRVTAQRPLRFFAYSWGEVRG
LPAGTPVVFDETGGAVRASSLPRDTHGGMLQWLAGLGLPVNVRFNHEAIGAEGLLAFYRR
IGAERSGLPYDIDGVVYKVDALAAQRVLGFVARAPRWALAHKFPAEEAVTDLLGIEVQVG
RTGAITPVARLKPVFVGGVTVTNATLHNEDEIRRKDVRVGDVVVVRRAGDVIPEVVGPVL
ERRAADFPLFVMPTECPVCGSAIERPEGETIARCTGGLFCPAQRKQTLLHAAGRKALDIE
GLGEKLIDQLVDQGRLKTLADVFTLDAFELAALERMGKKSAENLVAAIEQARRPSLGRLL
FALGIRHVGETTARDVARHFGNIEAIMQADEAALLEVPDVGPVVAGSIHRFFLEAHNRDV
VHQLQQRGVQPQAEAQTQDGNLTGKTFVLTGTMPTWSRDEATRYILAAGGKVSGSVSKKT
AYVVAGEEAGSKLVKAQELGVTILDEDGLKALLGQ
NT seq
2088 nt
NT seq
+upstream
nt +downstream
nt
atggcaggccgcgagcaggcggcgcagcgcgtggccgcgctgcgccatgagatcgaacag
cacaacgtccgttactacgtctacgacgaacccagcattccggatgccgaatatgaccgc
ctgatgggcgagttgacggccctggagaccgagcatccggagctggtgacgcctgattcc
cccacccagcgggtgggcgccgcgcccctggccgagttcggcagcgtccagcacgccgtg
ccgatgctgtcgttgggcaatggcttcgacgatgaagacgtcctggcttttgacaaacgc
gtcggcgatacgctgcgcggtgcaggtctgctggggccggccgaggcggcgcgctatttc
tgtgagctcaaactcgacggcctggccattaccctgcgctatgaggacggtgaactggtg
caggccgccacgcgcggcgatggccagaccggagaagacgtcaccgccaatatccgtacc
atcaaggctattccgctgcgcctgaagggtccggcgcccgaggtgctggaagtgcgcggc
gaagtgctgatgaatcgcagcgacttcgaacgcctgaatcagaagcaggcggcgcgcgac
gaaaaagtgttcgtcaacccgcgcaacgctgccgccggcagcctgcgtcagctcgacccg
cgcgtcacggcccagcgccccctgcgtttcttcgcctacagctggggcgaggtgcgcggt
ctgccggccggcacgccggtggtcttcgatgaaacgggcggtgccgtccgagcttcatcg
ctgccgcgcgacacccatggcggcatgctgcaatggctggccgggctggggctgccggtc
aatgtgcgtttcaaccacgaagcgatcggcgccgagggcctgctggcgttctaccggcgc
atcggggccgagcgctccgggctgccctacgacatcgatggggtggtctacaaggtcgat
gcgctggccgcgcagcgcgtgcttggtttcgtggcgcgcgcgccgcgctgggcgctggcg
cacaagttccccgccgaagaggcggtcaccgatctgcttggcatcgaggtgcaggtcggg
cgcaccggcgcgatcacgcccgtggcccgtctgaagccggtcttcgtcggtggcgtgacc
gtcaccaacgccacgctgcacaacgaggacgagatccgccgcaaggatgtaagggtgggc
gatgtggtcgtggtgaggcgggccggcgatgtcattcccgaagtcgtggggccggtgctt
gagcgccgcgcggccgactttcccctttttgtcatgccgaccgaatgtccggtctgcggt
tcggccatcgagcgtccggaaggcgagaccatcgcccgttgcacgggcggcctgttctgc
ccggcgcagcgcaaacagaccctgctgcatgcggcgggccgcaaggcgctggatatcgaa
gggctgggcgagaagctgatcgaccagctggtcgaccagggtcgcctgaaaacgctggcc
gatgttttcacgctggatgcctttgagctggcagcgctggagcgcatgggcaagaagtcg
gccgagaatctggtcgccgccatcgaacaggcgcgccggccatccctggggcgtttgctg
tttgccctgggtatccgccatgtgggcgaaaccacggcgcgcgatgtggcgcgccatttt
ggcaatatcgaggccatcatgcaggccgacgaggcggccttgcttgaagtgcccgatgtc
gggccggtggtggcggggtccatccatcgcttcttcctggaggcgcacaatcgcgacgtg
gtgcatcaattgcagcagcgcggcgtgcagccccaggccgaggcgcagacccaggatggc
aatcttaccggcaagaccttcgtgctgaccggcaccatgcctacctggagccgggacgag
gccacgcgctatatcctcgccgcgggtggcaaggtgagtggttctgtgtccaagaaaacc
gcctatgtggtggctggcgaggaagctggcagcaagctggtcaaggcccaggagctgggc
gtgacgattctcgacgaggacgggctcaaggcgctgctcggccagtag
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