Bacillus tropicus: FJR70_23505
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Entry
FJR70_23505 CDS
T06661
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
btro
Bacillus tropicus
Pathway
btro03030
DNA replication
btro03410
Base excision repair
btro03420
Nucleotide excision repair
btro03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
btro00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FJR70_23505 (ligA)
03410 Base excision repair
FJR70_23505 (ligA)
03420 Nucleotide excision repair
FJR70_23505 (ligA)
03430 Mismatch repair
FJR70_23505 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
btro03032
]
FJR70_23505 (ligA)
03400 DNA repair and recombination proteins [BR:
btro03400
]
FJR70_23505 (ligA)
Enzymes [BR:
btro01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FJR70_23505 (ligA)
DNA replication proteins [BR:
btro03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FJR70_23505 (ligA)
DNA repair and recombination proteins [BR:
btro03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FJR70_23505 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FJR70_23505 (ligA)
MMR (mismatch excision repair)
DNA ligase
FJR70_23505 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FJR70_23505 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
RNA_pol_A_CTD
Nlig-Ia
HHH
PTCB-BRCT
BRCT_2
HHH_3
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
QDF25760
LinkDB
All DBs
Position
4409635..4411644
Genome browser
AA seq
669 aa
AA seq
DB search
MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFMSEDSP
SIRVGGTVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVRQGIDDANVRYICELKIDGL
AVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIPLRLNEEVTLEARGEAYMPKRSFV
KLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEKTIPSHSESL
DFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDVALQESLGTT
AKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRRASLHNEDL
IREKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYHMPTHCPACESELVRLEEEVA
LRCINPTCPAQIREGLIHFVSRNAMNIDGLGERVITQLFDADYIRTFADLYSLTKEQLLQ
LERFGEKSATNLVQAIENSKENSLERLLFGLGIRHVGAKAARTFAEHFETMDALVKATEE
ELKAINEIGEKMAQSVVTYFDNEDVLELLQQFKEYGVNMAYKGIKIADLQNVESYFAGKT
VVLTGKLEVMGRSEAKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNE
ERFLQELNK
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaagagatagcaaaaaaacgtatagaagaactacgtgatttgttaaatacattt
aactatcaatatcacgtattagacaatccttctgtttctgatgcggagtatgaccgtaat
atgcaggagcttataaaattagaagcagagaacccagagtttatgagtgaagattctccc
tctattcgtgttgggggaacggttcttgatatatttgaaaaagtaacacataagtcaccg
atgttaagtttaggaaatgcatttaacgaaggagatttacgtgattttgaccgacgagta
cgtcaaggaattgatgatgcgaatgtaagatatatatgcgaattaaaaattgacggactt
gctgtttcacttcattatgaaaaaggacgcttcattcaaggggcaacacgtggtgatggt
gtaacaggtgaagatattacccaaaatttaaaaacgattaaagcaatcccgcttcgttta
aatgaagaagtaacgttagaagcacgaggcgaagcttatatgcctaagcgttcattcgtt
aagttaaatgaagaaaaagagcaaaatggtgaagatgtatttgcgaatccgcgtaatgcg
gcagcaggttcaatccgccaacttgatccgaaaattgcagcgaagcgtaacttatctatg
tttgtatacggtcttgcgaatgtagaagaaaaaacaatcccatcacatagtgaatcgctt
gatttcttaggtgaacttggattcaaaacgaatccaaatcgtcgtacatgtgaaacaatt
gaagaagttatagcatatgtagaagaatggcaagaaaaacgtccgcatcttgattatgag
attgatgggatcgttataaaagtagatgatgttgctcttcaagaaagtctaggaactaca
gcaaagagtccaagatgggcgattgcttataaattcccagcggaagaagttgtaacaaga
ttaacaggcattgaattaagtgttggtcgtacaggggttgtaacaccgactgcagagcta
gagccagtgcgagtggctggtactatcgttcgtcgtgcttctttacataacgaagattta
attcgtgaaaaagatattcgaattggtgactacgttgttgtgaagaaggctggagatatt
attcctgaagttgtgaatgttattttcgataagcgtactggtgaggaagaagaatatcat
atgccaacgcattgcccagcatgtgagagtgaactagttcgtttagaagaagaggtagca
cttcgttgtataaatccaacttgtcctgcccaaattcgagaaggcttaattcatttcgtt
tcaagaaatgcaatgaatattgatggacttggagaacgtgtcattacacaactctttgat
gctgattatattcgtacatttgctgatttatattcgttgacgaaagagcaattattacag
ctagaacgatttggagaaaaatcagcaacgaatttagtccaagcaattgagaattctaaa
gaaaactcattagagcgattattattcggtcttggtattcgtcatgtcggggcgaaagca
gcacgtacatttgcagagcatttcgaaacgatggatgcacttgtgaaagcgacggaagaa
gaactaaaagcaattaacgagattggtgaaaaaatggctcaatccgtcgtgacgtatttt
gataatgaagatgtattagaattattacaacaatttaaagagtatggcgtgaatatggca
tacaaaggtataaaaattgctgatttacaaaatgttgagtcgtacttcgcaggaaaaact
gtcgttttaacagggaaattagaagttatgggacgtagtgaagcgaagaagaagattgag
gcattaggtggaaaagtaacaggaagtgttagtaaaagtacggatttagttgttgcaggt
gaagcggcaggttcgaaattagcacaagcggagaaacataatgttgaggtttggaatgaa
gagaggttcttacaagagctaaataagtaa
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