Borreliella turdi: QIA31_03260
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Entry
QIA31_03260 CDS
T09185
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
btud
Borreliella turdi
Pathway
btud03030
DNA replication
btud03410
Base excision repair
btud03420
Nucleotide excision repair
btud03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
btud00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
QIA31_03260 (ligA)
03410 Base excision repair
QIA31_03260 (ligA)
03420 Nucleotide excision repair
QIA31_03260 (ligA)
03430 Mismatch repair
QIA31_03260 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
btud03032
]
QIA31_03260 (ligA)
03400 DNA repair and recombination proteins [BR:
btud03400
]
QIA31_03260 (ligA)
Enzymes [BR:
btud01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
QIA31_03260 (ligA)
DNA replication proteins [BR:
btud03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
QIA31_03260 (ligA)
DNA repair and recombination proteins [BR:
btud03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
QIA31_03260 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
QIA31_03260 (ligA)
MMR (mismatch excision repair)
DNA ligase
QIA31_03260 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
QIA31_03260 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_5
HHH_2
PTCB-BRCT
DNA_ligase_ZBD
PTSIIA_gutA
COMM_HN
GerPB
U3_assoc_6
Auto_anti-p27
HHH
HMBD
Motif
Other DBs
NCBI-ProteinID:
WKC78388
LinkDB
All DBs
Position
561093..563075
Genome browser
AA seq
660 aa
AA seq
DB search
MSSKIQQEIANLKKLIRKWDKEYYVDSLPSVEDFVYDKHILRLQELESKYPEYKTLDSPT
LKFGSDLLNDFKEVEHSVPILSLDKVYDLNLLESWIDKIDFNNSFNISVEPKIDGCSIVL
YYKDGILEKALTRGNGKFGNDVTKNIKTIKHIPLFLDEKVDLILRGEVYISKKNFFKINK
FLEKPYTNSRNLASGILRRVDSREVANFPLNIFIYDFLNAGLEFEANDLAIERLKKLGFK
VDPLIRFFDQKSSIGKVLNYIADITKKRNSFEYEIDGVVLKVSDFTLRERLGYTSHHPKW
AMAYKFEALSGFSRVNSIVVQVGRSGKITPVANIDKVFVSGAFITNATLHNQDYIISIGL
NVGDVVKVSRRGDVIPAVEMVVNKFSKGFFKVPDNCPACNMVLVKEGAHFFCVNNNCPSV
VVEKIKFFCSKNCMDIEGLSDKTISFLFEKKFISSEVDLYTFNFYKLLEFKGFKDKKVNN
LINSIEASKKKPFSKLLLSMGIKELGENAIRLLFINNLNSFSKLFRLCQDRDFAFLTLLK
IKGIGEKIASNIIEAFNDSIMLNKFKFFENLEFKMEESIMIDDGNKLLLDKKFCITGAFN
GYSRSIVIDRLINKGAVFKTCVTSSLDFLVVGEKAGSKLKKALDLNIKIISFEDIKSYLD
NT seq
1983 nt
NT seq
+upstream
nt +downstream
nt
atgagcagtaaaatacagcaagaaattgcaaacttaaaaaagttgattagaaagtgggat
aaagagtactatgtcgattctttgcccagtgttgaagattttgtatatgataagcatatt
ttaaggcttcaagagttggaaagtaagtatcctgaatataagaccttagattcccccact
cttaagtttggcagtgatcttttgaatgactttaaagaagttgaacattctgttcctata
ttaagtcttgacaaggtttatgatcttaatttgttagaatcatggatagataagattgat
tttaacaattcttttaatatttctgttgaaccaaagattgatggatgttctattgttctt
tattataaagatggtattcttgaaaaagctcttactaggggtaatggaaaatttggtaat
gacgttactaaaaacattaaaaccattaagcatattcctttatttcttgatgaaaaggtt
gatttaatattaagaggagaggtttatattagtaaaaaaaatttttttaaaataaataaa
tttttggaaaaaccttatactaattctagaaatttagcctcagggatacttagaagggtt
gatagcagggaggttgctaatttccctttaaatattttcatttatgattttttgaatgct
ggattggagtttgaagctaatgatttggctattgaaagactaaagaaattgggttttaaa
gttgatcctttaattagattttttgatcaaaaaagttctattgggaaagttttaaattac
atagcagatataacaaaaaaaagaaattcttttgagtatgaaatagatggagttgttctt
aaggttagcgattttactttaagagaaagattgggctatacctcgcatcaccctaaatgg
gcaatggcttacaaatttgaagctctttcgggttttagcagggtaaatagtattgttgtt
caggttgggcgtagtggtaaaattactccggttgctaatattgataaagtttttgtttca
ggggcttttattaccaatgcaaccttgcataatcaagattatataatatctattggtttg
aatgttggtgatgttgttaaggtttcaagaagaggagatgtgattcctgctgttgaaatg
gtagtaaataaattttcaaaagggtttttcaaggttcctgataattgtccagcttgcaat
atggttttagtaaaagagggagcccattttttttgtgtaaataataattgtccttcagtg
gtagttgagaagataaaatttttttgtagtaaaaattgtatggatattgaagggctttct
gataaaaccatttcttttctttttgagaagaaatttatttcttcagaagttgatctttat
acatttaatttttataaacttcttgaatttaaagggtttaaagataaaaaggtaaataat
ttgataaattcaattgaagctagcaaaaaaaagccatttagtaaattacttcttagtatg
ggaattaaagagttaggagaaaatgctataaggttgttatttattaataacttaaattca
ttttcaaagctttttaggctttgtcaagatagagattttgcttttttaacattattgaaa
attaaaggcataggagaaaaaattgcttcaaatattattgaagcttttaatgattcaata
atgcttaataagtttaaattttttgaaaatttagaatttaaaatggaagagtctatcatg
attgatgatggaaataagttattacttgataaaaagttttgcattactggagctttcaat
ggttattctaggtctattgttattgatagactaataaataaaggggcagtttttaaaacc
tgtgtaaccagtagtttggattttcttgttgtaggagaaaaagctggatcaaagcttaaa
aaagctttggatttgaatataaaaattatctcttttgaagatattaagagctacttggat
tga
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