KEGG   PATHWAY: bub00920
Entry
bub00920                    Pathway                                
Name
Sulfur metabolism - Burkholderia ubonensis
Description
Sulfur is an essential element for life and the metabolism of organic sulfur compounds plays an important role in the global sulfur cycle. Sulfur occurs in various oxidation states ranging from +6 in sulfate to -2 in sulfide (H2S). Sulfate reduction can occur in both an energy consuming assimilatory pathway and an energy producing dissimilatory pathway. The assimilatory pathway, which is found in a wide range of organisms, produces reduced sulfur compounds for the biosynthesis of S-containing amino acids and does not lead to direct excretion of sulfide. In the dissimilatory pathway, which is restricted to obligatory anaerobic bacterial and archaeal lineages, sulfate (or sulfur) is the terminal electron acceptor of the respiratory chain producing large quantities of inorganic sulfide. Both pathways start from the activation of sulfate by reaction with ATP to form adenylyl sulfate (APS). In the assimilatory pathway [MD:M00176] APS is converted to 3'-phosphoadenylyl sulfate (PAPS) and then reduced to sulfite, and sulfite is further reduced to sulfide by the assimilatory sulfite reductase. In the dissimilatory pathway [MD:M00596] APS is directly reduced to sulfite, and sulfite is further reduced to sulfide by the dissimilatory sulfite reductase. The capacity for oxidation of sulfur is quite widespread among bacteria and archaea, comprising phototrophs and chemolithoautotrophs. The SOX (sulfur-oxidation) system [MD:M00595] is a well-known sulfur oxidation pathway and is found in both photosynthetic and non-photosynthetic sulfur-oxidizing bacteria. Green sulfur bacteria and purple sulfur bacteria carry out anoxygenic photosynthesis with reduced sulfur compounds such as sulfide and elemental sulfur, as well as thiosulfate (in some species with the SOX system), as the electron donor for photoautotrophic growth. In some chemolithoautotrophic sulfur oxidizers (such as Thiobacillus denitrificans), it has been suggested that dissimilatory sulfur reduction enzymes operate in the reverse direction, forming a sulfur oxidation pathway from sulfite to APS and then to sulfate.
Class
Metabolism; Energy metabolism
Pathway map
bub00920  Sulfur metabolism
bub00920

Module
bub_M00021  Cysteine biosynthesis, serine => cysteine [PATH:bub00920]
bub_M00176  Assimilatory sulfate reduction, sulfate => H2S [PATH:bub00920]
Other DBs
GO: 0006790
Organism
Burkholderia ubonensis [GN:bub]
Gene
BW23_1937  sulfate ABC transporter, sulfate-binding family protein [KO:K02048]
BW23_125  sulfate ABC transporter, sulfate-binding family protein [KO:K23163]
BW23_124  cysT; sulfate ABC transporter, permease protein CysT [KO:K02046]
BW23_123  cysW; sulfate ABC transporter, permease protein CysW [KO:K02047]
BW23_122  cysA; sulfate ABC transporter, ATP-binding family protein [KO:K02045] [EC:7.3.2.3]
BW23_1999  tauA; taurine ABC transporter, periplasmic binding protein [KO:K15551]
BW23_2001  binding--dependent transport system inner membrane component family protein [KO:K15552]
BW23_2000  ABC transporter family protein [KO:K10831] [EC:7.6.2.7]
BW23_4809  ABC transporter, substrate-binding, aliphatic sulfonates family protein [KO:K15553]
BW23_5062  ABC transporter, substrate-binding, aliphatic sulfonates family protein [KO:K15553]
BW23_5449  ABC transporter, substrate-binding, aliphatic sulfonates family protein [KO:K15553]
BW23_5213  ABC transporter, substrate-binding, aliphatic sulfonates family protein [KO:K15553]
BW23_1672  bacterial extracellular solute-binding s, 3 family protein [KO:K15553]
BW23_4335  NMT1-like family protein [KO:K15553]
BW23_5066  NMT1-like family protein [KO:K15553]
BW23_4274  NMT1-like family protein [KO:K15553]
BW23_5065  binding--dependent transport system inner membrane component family protein [KO:K15554]
BW23_156  binding--dependent transport system inner membrane component family protein [KO:K15554]
BW23_4276  binding--dependent transport system inner membrane component family protein [KO:K15554]
BW23_1674  binding--dependent transport system inner membrane component family protein [KO:K15554]
BW23_155  ABC transporter family protein [KO:K15555] [EC:7.6.2.14]
BW23_4275  ABC transporter family protein [KO:K15555] [EC:7.6.2.14]
BW23_5064  ABC transporter family protein [KO:K15555] [EC:7.6.2.14]
BW23_1673  ABC transporter family protein [KO:K15555] [EC:7.6.2.14]
BW23_157  ssuD; alkanesulfonate monooxygenase, FMNH(2)-dependent [KO:K04091] [EC:1.14.14.5 1.14.14.34]
BW23_5068  luciferase-like monooxygenase family protein [KO:K04091] [EC:1.14.14.5 1.14.14.34]
BW23_3637  NADPH-dependent FMN reductase family protein [KO:K00299] [EC:1.5.1.38]
BW23_2411  cysN; sulfate adenylyltransferase, large subunit [KO:K00956] [EC:2.7.7.4]
BW23_2410  phosphoadenosine phosphosulfate reductase family protein [KO:K00957] [EC:2.7.7.4]
BW23_5719  ATP adenylyltransferase family protein [KO:K00988] [EC:2.7.7.5 2.7.7.53]
BW23_2744  cysC; adenylyl-sulfate kinase [KO:K00860] [EC:2.7.1.25]
BW23_2409  adenylylsulfate reductase, thioredoxin dependent family protein [KO:K00390] [EC:1.8.4.8 1.8.4.10]
BW23_5332  FAD binding domain protein [KO:K00380] [EC:1.8.1.2]
BW23_5321  nitrite and sulphite reductase 4Fe-4S domain protein [KO:K00381] [EC:1.8.1.2]
BW23_2407  nitrite and sulphite reductase 4Fe-4S domain protein [KO:K00381] [EC:1.8.1.2]
BW23_3235  pyridine nucleotide-disulfide oxidoreductase family protein [KO:K17218] [EC:1.8.5.4]
BW23_3850  eTHE1; ETHE1, mitochondrial domain protein [KO:K17725] [EC:1.13.11.18]
BW23_3734  doxX family protein [KO:K16937] [EC:1.8.5.2]
BW23_4642  rhodanese-like domain protein [KO:K01011] [EC:2.8.1.1 2.8.1.2]
BW23_4075  hypothetical protein [KO:K00640] [EC:2.3.1.30]
BW23_2899  cysE; serine O-acetyltransferase [KO:K00640] [EC:2.3.1.30]
BW23_3266  pyridoxal-phosphate dependent enzyme family protein [KO:K01738] [EC:2.5.1.47]
BW23_1785  metX; homoserine O-acetyltransferase [KO:K00641] [EC:2.3.1.31 2.3.1.46]
BW23_4728  metZ; O-succinylhomoserine sulfhydrylase [KO:K10764] [EC:2.5.1.-]
BW23_2311  56kDa selenium binding family protein [KO:K17285] [EC:1.8.3.4]
BW23_3084  AMP-binding enzyme family protein [KO:K20034] [EC:6.2.1.44]
BW23_5105  AMP-binding enzyme family protein [KO:K20034] [EC:6.2.1.44]
BW23_670  hypothetical protein [KO:K20035] [EC:1.3.99.41]
BW23_6258  hypothetical protein [KO:K20035] [EC:1.3.99.41]
BW23_2173  hypothetical protein [KO:K20035] [EC:1.3.99.41]
Compound
C00033  Acetate
C00042  Succinate
C00053  3'-Phosphoadenylyl sulfate
C00054  Adenosine 3',5'-bisphosphate
C00059  Sulfate
C00065  L-Serine
C00084  Acetaldehyde
C00087  Sulfur
C00094  Sulfite
C00097  L-Cysteine
C00155  L-Homocysteine
C00224  Adenylyl sulfate
C00245  Taurine
C00263  L-Homoserine
C00283  Hydrogen sulfide
C00320  Thiosulfate
C00409  Methanethiol
C00580  Dimethyl sulfide
C00979  O-Acetyl-L-serine
C01118  O-Succinyl-L-homoserine
C01861  Trithionate
C02084  Tetrathionate
C03920  2-(Methylthio)ethanesulfonate
C04022  S,S-Dimethyl-beta-propiothetin
C08276  3-(Methylthio)propanoate
C11142  Dimethyl sulfone
C11143  Dimethyl sulfoxide
C11145  Methanesulfonic acid
C15521  Alkanesulfonate
C17267  S-Sulfanylglutathione
C19692  Polysulfide
C20870  3-(Methylthio)propanoyl-CoA
C20955  3-(Methylthio)acryloyl-CoA
C22834  Protein-trisulfide
Reference
  Authors
Grein F, Ramos AR, Venceslau SS, Pereira IA
  Title
Unifying concepts in anaerobic respiration: Insights from dissimilatory sulfur metabolism.
  Journal
Biochim Biophys Acta 1827:145-60 (2013)
DOI:10.1016/j.bbabio.2012.09.001
Reference
  Authors
Fauque GD, Barton LL
  Title
Hemoproteins in dissimilatory sulfate- and sulfur-reducing prokaryotes.
  Journal
Adv Microb Physiol 60:1-90 (2012)
DOI:10.1016/B978-0-12-398264-3.00001-2
Reference
  Authors
Sakurai H, Ogawa T, Shiga M, Inoue K
  Title
Inorganic sulfur oxidizing system in green sulfur bacteria.
  Journal
Photosynth Res 104:163-76 (2010)
DOI:10.1007/s11120-010-9531-2
Reference
  Authors
Falkenby LG, Szymanska M, Holkenbrink C, Habicht KS, Andersen JS, Miller M, Frigaard NU
  Title
Quantitative proteomics of Chlorobaculum tepidum: insights into the sulfur metabolism of a phototrophic green sulfur bacterium.
  Journal
FEMS Microbiol Lett 323:142-50 (2011)
DOI:10.1111/j.1574-6968.2011.02370.x
Reference
  Authors
Gregersen LH, Bryant DA, Frigaard NU
  Title
Mechanisms and evolution of oxidative sulfur metabolism in green sulfur bacteria.
  Journal
Front Microbiol 2:116 (2011)
DOI:10.3389/fmicb.2011.00116
Reference
  Authors
Beller HR, Chain PS, Letain TE, Chakicherla A, Larimer FW, Richardson PM, Coleman MA, Wood AP, Kelly DP.
  Title
The genome sequence of the obligately chemolithoautotrophic, facultatively anaerobic bacterium Thiobacillus denitrificans.
  Journal
J Bacteriol 188:1473-88 (2006)
DOI:10.1128/JB.188.4.1473-1488.2006
Reference
PMID:9695921
  Authors
Pott AS, Dahl C
  Title
Sirohaem sulfite reductase and other proteins encoded by genes at the dsr locus of Chromatium vinosum are involved in the oxidation of intracellular sulfur.
  Journal
Microbiology 144 ( Pt 7):1881-94 (1998)
DOI:10.1099/00221287-144-7-1881
Reference
  Authors
Frigaard NU, Dahl C
  Title
Sulfur metabolism in phototrophic sulfur bacteria.
  Journal
Adv Microb Physiol 54:103-200 (2009)
DOI:10.1016/S0065-2911(08)00002-7
Related
pathway
bub00260  Glycine, serine and threonine metabolism
bub00270  Cysteine and methionine metabolism
bub00680  Methane metabolism
bub00720  Other carbon fixation pathways
KO pathway
ko00920   
LinkDB

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