Burkholderia ubonensis: BW23_2973
Help
Entry
BW23_2973 CDS
T03794
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bub
Burkholderia ubonensis
Pathway
bub03030
DNA replication
bub03410
Base excision repair
bub03420
Nucleotide excision repair
bub03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bub00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BW23_2973 (ligA)
03410 Base excision repair
BW23_2973 (ligA)
03420 Nucleotide excision repair
BW23_2973 (ligA)
03430 Mismatch repair
BW23_2973 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bub03032
]
BW23_2973 (ligA)
03400 DNA repair and recombination proteins [BR:
bub03400
]
BW23_2973 (ligA)
Enzymes [BR:
bub01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BW23_2973 (ligA)
DNA replication proteins [BR:
bub03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BW23_2973 (ligA)
DNA repair and recombination proteins [BR:
bub03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BW23_2973 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BW23_2973 (ligA)
MMR (mismatch excision repair)
DNA ligase
BW23_2973 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BW23_2973 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
MctB
BRCT_2
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
AJX17623
LinkDB
All DBs
Position
I:3190751..3192826
Genome browser
AA seq
691 aa
AA seq
DB search
MARTQAEPPASQPDARAAWLRDQLERANHAYYVLDQPDLPDAEYDRLFLELQQIEADHPE
LVTPDSPTQRVGGAVAGGFTPVVHDAPMLSLNNGFEDEDIVAFDKRIADALDKAVDLAGS
VTDPVEYACELKFDGLAISLRYENGVFVQASTRGDGTTGEDVTQNVRTIRSLPLKLKGKN
LPAVLDVRGEVLMFKRDFARLNERQRAAGQREFANPRNAAAGSLRQLDPKITAQRPLSFF
AYGIGVLDGAPMPDTHSALLDWYETLGLPVNRERAVVRGADGLLGFFRKIGEQRESLPYD
IDGVVYKVNRRDEQERLGFVSRAPRFALAHKFPAQEALTTLVAIDVQVGRTGAITPVARL
EPVFVGGATVTNATLHNEDEVRRKDIRIGDTVIVRRAGDVIPEVVGAVLDRRPDPAPEFV
MPTECPVCGSRIERLPDEAIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEKIIDQLV
EQNLVRTPADLFNLGFATLAELDRFAEKSAQNLLDSLEKAKHTTLARFIYGLGIRHVGES
TAKDLAKHFGSLNPIMDATVEELLEVNDVGPIVAESIHQFFAEEHNRTVIEQLRAPGKVT
WPEGPPAPKAPQGVLAGKTVVLTGTLPNLTRDAAKEMLEAAGAKVAGSVSKKTDYVVAGA
EAGSKLAKAEELGIPVLDEDGLHQLLEGHAP
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atggcccgaacccaagccgaaccgccagccagccagcccgacgcgcgcgccgcgtggctg
cgcgaccaactcgagcgggcgaaccacgcctattacgtgctcgaccagccggacctgccc
gacgccgaatacgaccgactatttctcgaactgcaacagatcgaggcggaccaccccgaa
ctcgtgacgcccgactcgccgacgcagcgcgtcggcggcgcggtcgcgggcggctttacg
ccggtcgtccacgacgcgccgatgctgtcgctcaacaatggcttcgaggatgaggacatc
gtcgcgttcgacaagcgcatcgccgacgcgctcgacaaggccgtcgatctcgccgggtcg
gtgaccgaccccgtcgaatacgcgtgcgagctgaaattcgacggcctcgccatctcgctg
cgttacgaaaacggcgtgttcgtgcaggcgtcgacgcgcggcgacggcacgaccggcgag
gacgtgacgcagaacgtccgcacgatccgctcgctgccgctgaagctgaagggcaagaac
ctgccggccgtgctcgacgtgcgcggcgaggtgctgatgttcaagcgcgatttcgcgcgc
ctgaacgaacgccagcgcgcggccgggcagcgagaattcgcgaacccgcgcaacgcggcg
gccggcagcctgcgccagctcgatccgaagatcaccgcgcagcgcccgctgtcgttcttt
gcatacgggatcggcgtgctcgacggcgcaccgatgcccgacacgcacagcgcgctgctc
gactggtacgagacgctcggcctgccggtgaaccgcgagcgcgcggtcgtgcgcggcgct
gacgggctgctcgggttcttccgcaagatcggcgagcagcgcgagtcgctgccgtacgac
atcgacggcgtcgtctacaaggtgaaccgccgcgacgaacaggagcggctcggcttcgtg
tcgcgcgcgccgcgcttcgcgcttgcgcacaagtttcccgcgcaggaagcgctgacgacg
ctcgtcgcgatcgacgtgcaggtcgggcgcaccggcgcgatcacgccggtcgcgcggctc
gagccggtgttcgtcggcggcgcgaccgtgaccaacgcgacgctgcacaacgaggacgag
gtgcgccgcaaggacatccgcatcggcgacacggtgatcgtgcggcgtgcgggcgacgtg
attccggaagtggtcggcgcggtgctcgaccggcggccggacccggcaccggagttcgtg
atgccgaccgagtgcccggtgtgcggctcgcgcatcgagcggctgccggacgaggcgatc
gcccgctgcacgggcggcctgttctgcccggcgcagcgcaagcaggcgctgtggcacttc
gcgcagcggcgcgcgctcgacatcgacgggctcggcgagaagatcatcgaccagctggtc
gagcagaacctcgtgcgcacgccggccgacctgttcaacctcggcttcgcgacgctcgcg
gaactcgaccggttcgcggagaagtccgcgcagaacctgctcgattcgctcgagaaggcc
aagcacacgacgctggcacgcttcatctacgggctcggcatccgccacgtcggcgaatcg
accgcgaaggatctcgcgaagcatttcggctcactgaatccgatcatggatgcgacggtc
gaggaattgctcgaagtcaacgacgtcgggccgatcgtcgccgagtcgatccaccagttc
ttcgcggaggagcacaaccgcacggtgatcgagcagctgcgcgcgccgggcaaggtcacg
tggcccgaagggccgcccgcgccgaaggcgccgcagggcgtgctggccggcaagaccgtc
gtgctgacgggcacgctgccgaaccttacgcgcgatgcggcgaaggagatgctcgaggcg
gccggcgcgaaggtcgccggctcggtgtcgaagaagacggattatgtcgtcgcgggcgcg
gaggcgggcagcaagctcgcgaaggccgaggagctcggcatccccgtgctggacgaagac
ggattacaccaacttctggagggccatgcgccatga
DBGET
integrated database retrieval system
