Burkholderia humptydooensis MSMB43: AQ610_07390
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Entry
AQ610_07390 CDS
T04266
Symbol
ligA
Name
(GenBank) aromatic ring-opening dioxygenase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bud
Burkholderia humptydooensis MSMB43
Pathway
bud03030
DNA replication
bud03410
Base excision repair
bud03420
Nucleotide excision repair
bud03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bud00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AQ610_07390 (ligA)
03410 Base excision repair
AQ610_07390 (ligA)
03420 Nucleotide excision repair
AQ610_07390 (ligA)
03430 Mismatch repair
AQ610_07390 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bud03032
]
AQ610_07390 (ligA)
03400 DNA repair and recombination proteins [BR:
bud03400
]
AQ610_07390 (ligA)
Enzymes [BR:
bud01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AQ610_07390 (ligA)
DNA replication proteins [BR:
bud03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AQ610_07390 (ligA)
DNA repair and recombination proteins [BR:
bud03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AQ610_07390 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AQ610_07390 (ligA)
MMR (mismatch excision repair)
DNA ligase
AQ610_07390 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AQ610_07390 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
MctB
Nlig-Ia
5_3_exonuc
DUF8122
Motif
Other DBs
NCBI-ProteinID:
ALX42262
LinkDB
All DBs
Position
1:1610620..1612695
Genome browser
AA seq
691 aa
AA seq
DB search
MARSPVEPPASQPAKRAAWLRAELERANYAYYVLDQPDLPDAEYDRLFVELQQIEAEHPD
LVTPDSPTQRVGGEVAGGFTPVVHDTPMLSLNNGFSDDDVVAFDKRVADGLDKATDLAGT
VTEPVEYACELKFDGLAISLRYEGGRFVQASTRGDGTTGEDVTENIRTVRSIPLTLKGRH
VPRMLDVRGEVLMFKRDFARLNERQRAAGQREFANPRNAAAGSLRQLDSKITASRPLSFF
AYGIGVLDGVEMPGTHSGLLDWYETLGLPVNRERAVVRGAAGLLGFFHSVGERRESLPYD
IDGVVYKVNRRDEQDRLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARL
EPVFVGGATVTNATLHNEDEVRRKDIRIGDTVIVRRAGDVIPEVVSAVLDRRPADAREFV
MPTECPECGSRIERLPDEAIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEKIIDQLV
EQNLVRTPADLFNLGFSTLVELDRFAEKSAQNLIDSLEKAKHTTLARFIYALGIRHVGES
TAKDLAKHFGSLDPVMDASIDELLEVNDVGPIVAESIHQFFAEEHNRTVIEQLRAKGKVT
WPEGPPAPRAPQGVLAGKTVVLTGTLPTLTRDAAKEMLEAAGAKVAGSVSKKTDYVVAGA
DAGSKLAKAEELGIPVLDEAGMHKLLEGHAR
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atggcccgatcccctgttgaaccgcccgccagccagccggcgaagcgcgccgcgtggctg
cgcgccgagctcgagcgggcgaactacgcgtattacgtgctcgatcagccggacctgccc
gacgccgagtacgatcgcctcttcgtcgaactccagcagatcgaggccgagcaccccgat
ctcgtcacgcccgattcgccgacgcagcgcgtcggcggcgaagtcgcgggcggcttcacg
ccggtcgtccacgacacgccgatgctgtcgctcaacaatggcttttccgacgacgacgtc
gtcgcattcgacaagcgcgtcgccgacggcctcgacaaggcgaccgacctcgccggcacc
gtgaccgagcccgtcgaatacgcgtgcgagctgaagttcgacggcctggcgatctcgctg
cgctacgagggcggccgcttcgtgcaagcatcgacgcgcggcgacggcacgacgggtgaa
gacgtcaccgagaacatccgcacggtccgctcgattccgctgacgctcaagggcaggcac
gtgccgcgcatgctcgacgtgcgcggcgaagtgctgatgttcaagcgcgatttcgcgcgc
ctgaacgagcgccagcgcgcggcgggccagcgcgagttcgcgaatccgcgcaacgcggcg
gcgggcagcctgcggcagctcgattcgaagatcaccgcgtctcggccgctgtcgtttttc
gcatacgggatcggcgtgctcgacggcgtcgagatgcccggcacgcacagcggcctgctc
gactggtacgagacgctcggcctgccggtgaaccgcgagcgcgcggtcgtgcgcggcgcg
gcgggcctgctcggattcttccattcggtgggcgagcggcgcgaatcgctgccgtacgac
atcgacggcgtcgtctacaaggtgaaccgccgcgacgagcaggatcggctcggcttcgtg
tcgcgtgcgccgcgctttgcgctcgcgcacaagttccctgcgcaggaggcgctcacgaag
ctcgtcgcgatcgacgtgcaggtcggccgcacgggcgcgatcacgccggtcgcgaggctc
gagcccgtgttcgtcggcggcgcgaccgtcacgaacgcgacgctgcacaacgaggacgag
gtgcgccgcaaggacatccggatcggcgacacggtcatcgtgcgccgcgcgggcgatgtg
attcccgaagtggtgtcggccgtgctcgaccggcgtcccgccgatgcgcgcgagttcgtg
atgccgaccgagtgcccggaatgcggatcgcggatcgagcgattgcccgacgaggcgatc
gcgcgctgcacgggcgggctgttctgccccgcgcagcgcaagcaggcgctctggcacttc
gcgcagcgccgcgcgctcgatatcgacgggctcggcgagaagatcatcgatcagctcgtc
gagcagaatctcgtgcgcacgccggccgatctgttcaatctcggcttctcgacgctcgtc
gagctcgatcgcttcgcggagaaatccgcgcagaacctgatcgactcgctcgaaaaggcg
aagcacacgacgctcgcgcgcttcatttacgcgctcggcatccggcacgtcggcgaatcg
acggcgaaggatctcgcgaagcacttcggctcgctcgatccggtcatggacgcgtcgatc
gacgagttgctcgaagtcaacgacgtcgggccgatcgtcgccgaatcgatccatcagttc
ttcgccgaggagcacaatcgcacggtgatcgagcaactgcgcgcgaagggcaaggtcacg
tggcccgaagggccgcccgcgccgcgcgcgccgcaaggcgtgctcgcgggcaagaccgtc
gtgctcacgggcacgctgccgacgctcacgcgcgacgccgcgaaggagatgctcgaggcg
gcgggcgcgaaggtggcgggctcggtgtcgaagaaaaccgattacgtcgtcgcgggcgcc
gacgcgggcagcaagctcgcgaaagccgaggaactcggcattccggtgctggacgaagca
ggcatgcacaaactcctggagggccacgcgcgatga
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