Caballeronia cordobensis: BRPE67_ACDS10870
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Entry
BRPE67_ACDS10870 CDS
T03604
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bue
Caballeronia cordobensis
Pathway
bue03030
DNA replication
bue03410
Base excision repair
bue03420
Nucleotide excision repair
bue03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bue00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BRPE67_ACDS10870 (ligA)
03410 Base excision repair
BRPE67_ACDS10870 (ligA)
03420 Nucleotide excision repair
BRPE67_ACDS10870 (ligA)
03430 Mismatch repair
BRPE67_ACDS10870 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bue03032
]
BRPE67_ACDS10870 (ligA)
03400 DNA repair and recombination proteins [BR:
bue03400
]
BRPE67_ACDS10870 (ligA)
Enzymes [BR:
bue01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BRPE67_ACDS10870 (ligA)
DNA replication proteins [BR:
bue03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BRPE67_ACDS10870 (ligA)
DNA repair and recombination proteins [BR:
bue03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BRPE67_ACDS10870 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BRPE67_ACDS10870 (ligA)
MMR (mismatch excision repair)
DNA ligase
BRPE67_ACDS10870 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BRPE67_ACDS10870 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
HHH
PTCB-BRCT
MctB
BRCT_2
5_3_exonuc
DUF5607
Motif
Other DBs
NCBI-ProteinID:
BAO86142
LinkDB
All DBs
Position
1:1178353..1180431
Genome browser
AA seq
692 aa
AA seq
DB search
MSAKTKAESAAVRQSGAAVPSADRPAERAAWLRAELERANYAYYVLDQPDLPDAEYDTLF
KELQGIEADHPDLITPDSPTQRVGGEVAEGFTPVVHDVPMLSLNNGFADEDIAAFDKRVS
DALGHAGVEYACELKFDGLAISLRYEDGRFVQAATRGDGATGEDVTANVRTIRSIPLTLK
GKNVPKRLDVRGEVLMFKRDFERLNQRQRDAGLREFANPRNAAAGGLRQLDPKMTAQRSL
SFFAYGIGVLEGADMPATHAALLDWYKEMGLPVNAERAVVEGADGLLGFFHKVGEKREKL
PYDIDGVVYKVDRRDEQDKLGFVSRAPRFALAHKFPAQEALTELLAIDVQVGRTGAITPV
ARLAPVFVGGATVTNATLHNEDEVRRKDIRIGDTVTVRRAGDVIPEVVGAILERRPADAR
EFVMPTECPVCGSKIERLPDEAIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEKIID
QLVEQNLVRTPADLFHLGFSTLAALDRFADKSAQNLIDSLEKASKTTLARFIYALGIRHV
GESTAKDLAKHFGSLDPIMSASVEELLEVNDVGPIVAEAIYNFFSEAHNQHVIEQLRAKV
SWPEGPPAPKAPQGVLAGKTVVLTGTLPTLSREEAKEMLETAGAKVAGSVSKKTDYVVAG
AEAGSKLAKAEELGVPVLDEDGMKKLLEGVTP
NT seq
2079 nt
NT seq
+upstream
nt +downstream
nt
atgtccgcaaaaacaaaagccgaatccgccgccgtccgacagtcgggcgctgccgtgccc
agtgccgatcgcccggccgagcgcgcggcatggctgcgtgcggaactggagcgcgcgaac
tacgcgtactacgtgctcgaccagccggacctgccggacgccgaatacgacacgctcttc
aaggagcttcagggcatcgaggcggatcatccggatctgatcacgccggattcgccgacg
cagcgcgtgggcggcgaagtggccgagggcttcacgccggtcgttcacgacgtgccgatg
ctctcgctcaacaacggtttcgcggacgaagacatcgccgcgttcgacaagcgcgtgtcc
gatgcgctgggccatgcgggcgtcgaatacgcgtgcgaactcaaattcgacggcctcgca
atttccctgcgatacgaggacggccgcttcgtgcaggcggccacgcgcggcgacggcgcg
accggcgaggacgtcacggcgaacgtgcgcaccatccgctcgattccgcttacgttgaag
ggcaagaacgtgccgaagcggctcgacgtgcgcggcgaagtgctgatgttcaagcgcgac
ttcgagcgcctcaaccagcgccagcgcgacgcgggcctgcgcgagttcgccaatccgcgt
aacgcggcggcgggcggcttgcgccagctcgatccgaaaatgacggcgcagcgctcgctc
tcgtttttcgcttatggcatcggcgtgctggaaggcgcggacatgcccgccacgcatgcg
gcgctcctcgactggtacaaggagatgggcttgcccgtgaatgcggagcgggcggtggtc
gaaggggcggacggcttgctcggcttctttcacaaggtcggcgagaagcgcgagaagctg
ccgtacgacatcgacggcgtcgtctacaaggtcgatcgccgcgacgagcaggacaagctc
ggcttcgtctcccgcgcgccgcgctttgcgctcgcgcacaaattcccggcgcaggaagcg
ctgaccgaactgctggccatcgacgtgcaggtcggccgcacgggcgcgatcacgccggtc
gcgcggctcgcgccggtgttcgtcggcggtgcgaccgtcaccaacgccacgctgcacaac
gaagacgaagtgcgccgcaaggacatccgcatcggcgatacggtcacggtgcggcgagcg
ggcgacgtgattcccgaagtcgtcggcgccattctcgagcggcgtccggcggacgcccgc
gagttcgtgatgccgacggagtgcccggtttgcggctcgaagatcgagcgcctgccggac
gaagccattgcgcgctgcacgggcgggctcttttgcccggcgcagcgcaagcaggcgctc
tggcacttcgcgcagcgccgcgcactcgacatcgacgggctcggcgagaaaatcatcgat
caactggtcgagcaaaacctcgtgcgcacgccggccgatctcttccatctgggcttttcg
acgctcgcggcgctcgatcgcttcgcggacaaatccgcgcaaaacctgatcgactcgctg
gaaaaagccagcaagacgacgctcgcgcgcttcatttacgcgctcggcatccggcatgtg
ggcgaatccacggcgaaggatctcgcgaagcacttcggctcgctcgatccgatcatgtcg
gcgtcggtggaagaactgctggaagtgaacgatgtcggcccgatcgtggccgaagccata
tacaacttcttcagcgaagcgcacaaccagcatgtgatcgagcagttgcgtgcgaaggtg
tcgtggccggaaggcccgcccgcgccgaaagcgccgcagggcgtgctcgcgggcaagacc
gtcgtgctgacgggcacgctgcccacgctctcgcgcgaggaagcgaaggaaatgctggag
acggccggagcgaaggtggccggatcggtatcgaagaagaccgactacgtcgtggcgggc
gcggaagcgggcagcaagctcgcgaaggcggaagaactcggtgttccggttctcgacgaa
gacggcatgaagaagcttttggaaggagtcactccatga
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