KEGG   Burkholderia sp. CCGE1001: BC1001_2170
Entry
BC1001_2170       CDS       T01424                                 
Name
(GenBank) DNA ligase, NAD-dependent
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
bug  Burkholderia sp. CCGE1001
Pathway
bug03030  DNA replication
bug03410  Base excision repair
bug03420  Nucleotide excision repair
bug03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:bug00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    BC1001_2170
   03410 Base excision repair
    BC1001_2170
   03420 Nucleotide excision repair
    BC1001_2170
   03430 Mismatch repair
    BC1001_2170
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:bug03032]
    BC1001_2170
   03400 DNA repair and recombination proteins [BR:bug03400]
    BC1001_2170
Enzymes [BR:bug01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     BC1001_2170
DNA replication proteins [BR:bug03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     BC1001_2170
DNA repair and recombination proteins [BR:bug03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     BC1001_2170
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     BC1001_2170
   MMR (mismatch excision repair)
    DNA ligase
     BC1001_2170
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      BC1001_2170
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT HHH_5 DNA_ligase_ZBD Nlig-Ia PTCB-BRCT HHH BRCT_2 5_3_exonuc
Other DBs
NCBI-ProteinID: ADX55587
LinkDB
Position
1:complement(2459176..2461242)
AA seq 688 aa
MARTTASNPASSAPAERAAWLRAELERANYAYYVLDQPDLPDAEYDKLFKELESIEAQHP
DLIVPDSPTQRVGGEAASGFEPVVHDQPMLSLNNGFADEDIVAFDKRVGDALGNNAKEPP
VPVDYATELKFDGLAISLRYVDGVFVQAATRGDGTTGENVTENIRTVRSIPLKLKGKRVP
HILDVRGEVLMFKRDFERLNERQRAAGHKEFANPRNAAAGSLRQLDPKITAQRPLSFFAY
GIGVLDGMEMPATHSELLDWYKELGLPVNSERAVVKGAEGLLAFFRAVGEKRDKLPYDID
GVVYKVNRRDEQDALGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARLEP
VFVGGATVTNATLHNEDEVRRKDIRIGDTVIVRRAGDVIPEVVSALLERRPDDAREFVMP
THCPVCGSSIERLPDEAIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEKIIDQLVEQ
NLVRTPADLFNLGFSTLAELDRFADKSAQNLLDSLEKAKHTTLARFIYALGIRHVGESTA
KDLAKHFGSLDPIMEASVEALLEVNDVGPVVAESIHQFFAEEHNRTVIEQLRAPGKVTWP
EGPPAPKAPQGVLAGKTIVLTGTLPTLAREEAKEMLEAAGAKVAGSVSKKTDYVVAGAEA
GSKLAKAEELGIPVLDEDGMRKLLEGQS
NT seq 2067 nt   +upstreamnt  +downstreamnt
atggctcgaactaccgcctcgaatccagcatccagcgctccggccgagcgtgccgcgtgg
ctgcgcgcggaacttgaacgcgccaactacgcgtactacgtgctggaccagcccgacttg
cccgacgcggaatacgacaagctgttcaaggagctggaaagcatcgaggcgcagcatccg
gatctgatcgtgccggattcgcccacgcagcgggtgggcggcgaggcggcgagcggcttc
gagcccgtcgtccatgatcagcccatgctgtcgctcaacaacggtttcgccgacgaagat
atcgtcgcgttcgacaaacgcgtaggcgacgcgctcggcaacaatgcgaaggaaccgccg
gtgccggtcgactatgcgacggagctgaaattcgacggcctcgccatttcgctgcgctat
gtcgacggcgtgttcgtgcaggccgccacgcgcggcgacggcacgaccggcgagaacgtc
acggaaaacatccgcaccgttcgttccattccgctcaaactgaagggcaagcgcgtgccg
cacatactcgacgtgcgaggcgaagtgctgatgttcaagcgcgacttcgagcgcctgaac
gaacggcagcgtgcggcgggccataaggagttcgccaatccgcgcaatgccgccgcgggc
agcctgcgccagctcgacccgaagatcaccgcgcaacggccgctgtcgttcttcgcgtat
ggcattggcgtgttggacggtatggagatgccggccacgcatagcgaactgctcgactgg
tacaaggaacttggcctgccggtcaattcggagcgcgcggtcgtgaagggcgcggaaggt
ttgctggcgtttttccgtgcggtaggcgagaagcgcgacaagctgccgtacgacatcgac
ggcgtggtgtacaaggtcaaccggcgcgacgaacaggacgcgctaggctttgtatcgcgt
gcgccgcgttttgcgctcgctcacaagtttccggcgcaggaagcgctcacgaagctcgtc
gccatcgacgtgcaggtgggccgcaccggtgcgattacgccggtcgcgcggctcgagccg
gtgttcgtcggcggcgccacggtcaccaatgcgacgctgcataacgaagacgaagtgcgg
cgcaaagacatccggatcggcgacacggtgatcgtgcggcgcgccggcgacgtgatcccg
gaggtggtgagcgcgcttctcgagcgtcgtccggacgacgcgcgcgagttcgtcatgccc
acgcattgtccggtgtgcggctcgagcatcgagcgtctgcctgacgaagcgattgcgcgt
tgcacgggcggcctgttctgtccggcgcagcgcaaacaggcgctgtggcatttcgcgcag
cggcgggccttggacatcgacggactgggcgaaaaaatcatcgatcaactggtcgaacag
aacctcgtgcgcacgcccgccgatctgttcaacctcggcttctcgacgcttgcggagttg
gaccgtttcgccgacaaatccgcgcagaacctgctcgactcgctcgaaaaggccaagcac
actacgcttgcacgtttcatctacgcgctcggcatccggcatgtcggcgaatccacggcg
aaagatctggcgaaacacttcggctcgctcgatccgatcatggaggcctcggtggaggcg
ctgctcgaggtcaacgacgtgggacccgtcgtggccgaatcgatccaccagttttttgcc
gaagagcacaaccgcacggtgatcgagcagttgcgcgcgccgggcaaagtcacgtggccc
gagggtccgcccgcgcccaaggcgccgcaaggtgtgctggccggcaagacgatcgtgctg
accggcactttgccgactcttgctcgcgaagaggccaaggaaatgctcgaagcggcgggc
gccaaagtggccggatcggtgtcgaagaaaacagactatgtggtggcgggagccgaagct
ggcagcaagttggcgaaggccgaggaactcggcattccggtactcgacgaagatggtatg
cgtaagctcctggaggggcagtcatga

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