Stenotrophomonas maltophilia JV3: BurJV3_2595
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Entry
BurJV3_2595 CDS
T01596
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
buj
Stenotrophomonas maltophilia JV3
Pathway
buj03030
DNA replication
buj03410
Base excision repair
buj03420
Nucleotide excision repair
buj03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
buj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BurJV3_2595
03410 Base excision repair
BurJV3_2595
03420 Nucleotide excision repair
BurJV3_2595
03430 Mismatch repair
BurJV3_2595
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
buj03032
]
BurJV3_2595
03400 DNA repair and recombination proteins [BR:
buj03400
]
BurJV3_2595
Enzymes [BR:
buj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BurJV3_2595
DNA replication proteins [BR:
buj03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BurJV3_2595
DNA repair and recombination proteins [BR:
buj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BurJV3_2595
NER (nucleotide excision repair)
GGR (global genome repair) factors
BurJV3_2595
MMR (mismatch excision repair)
DNA ligase
BurJV3_2595
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BurJV3_2595
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
AEM51915
LinkDB
All DBs
Position
complement(2857467..2859932)
Genome browser
AA seq
821 aa
AA seq
DB search
MSPSPAERAEDLRRQIAQANRAYHELDAPEIPDVDYDRMVRELEALEREHPELARADSPT
QQVGARPSGRFPEVRHAVPMLSLSNAFSDEEVADFVRRIDERLGRRSLRFSAEPKMDGLA
ISLRYEDGHFALGATRGDGSTGEDVTANLREIGDVPKRLHGKDWPDVLEVRGEVYMARAD
FEAYNERARQQGGKVLANPRNAAAGSLRQLDPKISAQRRLSFFAYGTGEVQGGELPDTHS
GTLAQLGAWGFPVSELCKVVEGTDGLLGYYRDIGERRDGLPFDIDGVVYKLDDRAGQQAM
GFVSRAPRWAIAHKFPAQEQSTTVEAIEIQIGRTGAATPVARLAPVAVAGVIVSNATLHN
ADQIARLDVRVGDSVIVRRAGDVIPEVVSVILDRRPQGTTPWQMPTRCPVCGSEIVREEG
AAAWRCSGELSCPAQRKEAIAHFASRRAMDIDGLGDKYIETLVDAGIVRSVADLYRLNRD
QLLHLKLVLDAEDPSALAAALKLHLPAEGSGAVLNAVLKLDGNDPAWRAQALAQPASFEW
NTKKIATKWADNLIAAIDASRAATLERLLFALGIEHVGESTAKALAQWFGDLELIRHLPW
PLFKRVPDIGGEVARSLGHFFEQQGNQQAIDDLLQVGQVRISDVHAPSAKLREGLDLAQL
LVESEIPGITRLRAEKLVAALPGAQAVLDAEHGQFVNAGLPDDTARGLVEWLDADGHGAM
LLAAEKAMQQILAKAPALAEIVAGPLDGQTVVLTGTLAQLTRDAAKERLEALGAKVSGSV
SKKTSFVVAGTEAGSKLDKAQSLGVPVWDEDRLLAYLAEHE
NT seq
2466 nt
NT seq
+upstream
nt +downstream
nt
atgagccccagccccgccgaacgcgccgaagaccttcgccggcagatcgcccaggccaac
cgcgcctaccacgagctggacgcgccggagatccccgacgtcgactacgaccggatggtg
cgcgagctggaagcgctggagcgcgagcaccctgaactggcccgtgccgacagcccgacc
cagcaggtcggtgcgcgcccgtccggccgcttccccgaagtgcgccacgcggtgcccatg
ctgtcgttgtccaatgccttcagcgatgaggaagtggccgacttcgtgcgccgcatcgat
gagcgcctgggccgtcgcagcctgcgcttctcggccgagccgaagatggacggcctggcg
atcagcctgcgctacgaggacggtcatttcgcactcggcgcaacccgcggtgatggcagt
accggcgaggacgtgaccgccaacctgcgcgagatcggcgatgttcccaagcgcctgcac
ggcaaggactggcccgacgtgctggaggtgcgtggcgaggtctacatggcccgcgccgac
ttcgaggcctacaacgagcgcgcgcgccagcagggcggcaaggtgctggccaacccgcgc
aacgcggcagccggttcactccgccagctcgatccgaagatcagtgcgcagcgcaggctg
agtttcttcgcctacggcaccggcgaagtgcagggcggcgagctgccggacacccattcg
ggcacgctggcccagctcggtgcctggggctttccggtcagcgagttgtgcaaggtggtg
gaaggcaccgacggcctgctgggctactaccgtgacatcggcgagcgccgtgatggcctg
ccgttcgatattgatggcgtggtgtacaagctggatgaccgtgccggccagcaggcgatg
ggtttcgtttcgcgcgcgccgcgctgggccatcgcgcacaaattcccggcgcaggaacag
agcactacggtggaggcgatcgagatccagatcggccgcaccggtgccgccacgccggtt
gcgcggctggcgccggtggctgtggccggcgtgatcgtgtccaacgccaccttgcacaat
gccgatcagatcgcgcgcctggatgtgcgcgtgggtgacagtgtgatcgtgcgacgtgcg
ggcgacgtgattccggaagtggtcagcgtcatcctcgaccgccgcccgcagggcaccacg
ccctggcagatgccgacgcgctgcccggtgtgcggatcggaaatcgtgcgcgaggaaggt
gccgctgcgtggcgctgttcgggcgaactgtcctgcccggcgcagcgcaaggaggccatt
gcccatttcgcttcgcgtcgtgcgatggatatcgacggcctcggcgacaagtacatcgaa
accctggtcgacgccggcatcgtcaggagcgtggccgatctgtaccggctcaaccgcgac
cagctgctgcacctgaagctggtgctggacgccgaggatccgtcggcactggcagccgcg
ctgaagctgcacctgccggccgaaggcagcggcgcggtgctcaatgcggtgctcaagctg
gatggcaacgatccggcgtggcgcgcgcaggcgctggcgcagccggccagcttcgaatgg
aatacgaagaagatcgccaccaagtgggccgacaacctgatcgcggcaatcgacgccagc
cgtgcggccacgctggagcgcctgctgttcgcgcttggcatcgagcacgtcggcgagagc
acggccaaggcgctggcgcagtggttcggtgacctggagctgatccgccacctgccttgg
ccgttgttcaagcgcgtgccggacatcgggggcgaagtggcgcgttcgcttggccacttc
ttcgagcagcagggcaaccagcaggccatcgatgacctgctgcaggtcgggcaggtgcgc
atcagcgatgtgcacgcgcccagcgccaagctgcgcgagggcctggatctggcgcagctg
ctggttgaatcggaaatccccggcatcacccgcctgcgtgccgaaaagctggtggctgcg
cttcccggcgcgcaggccgtgcttgacgccgagcatggccagttcgtcaacgccggcctg
ccggacgacactgcgcgcggattggtcgagtggctcgatgccgatggccatggcgcgatg
ctgctggcggccgagaaggcgatgcagcagatcctggccaaggcgccggcgctggccgag
atcgtggccggcccgctggatgggcagaccgtggtgctgaccggcaccctggcccagctc
acccgcgatgccgccaaggagcgcctggaagcgctgggtgccaaggtctccggcagcgtg
tcgaagaagaccagcttcgtggtggcaggcaccgaggccggctccaagctggacaaggcg
caatcgctgggcgtgccggtatgggacgaagaccgcctgctggcctacctcgccgaacac
gaatga
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