Burkholderia sp. PAMC 26561: AXG89_11915
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Entry
AXG89_11915 CDS
T05481
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bum
Burkholderia sp. PAMC 26561
Pathway
bum03030
DNA replication
bum03410
Base excision repair
bum03420
Nucleotide excision repair
bum03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bum00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AXG89_11915 (ligA)
03410 Base excision repair
AXG89_11915 (ligA)
03420 Nucleotide excision repair
AXG89_11915 (ligA)
03430 Mismatch repair
AXG89_11915 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bum03032
]
AXG89_11915 (ligA)
03400 DNA repair and recombination proteins [BR:
bum03400
]
AXG89_11915 (ligA)
Enzymes [BR:
bum01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AXG89_11915 (ligA)
DNA replication proteins [BR:
bum03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AXG89_11915 (ligA)
DNA repair and recombination proteins [BR:
bum03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AXG89_11915 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AXG89_11915 (ligA)
MMR (mismatch excision repair)
DNA ligase
AXG89_11915 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AXG89_11915 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
MctB
BRCT_2
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
AME24446
LinkDB
All DBs
Position
1:2612344..2614440
Genome browser
AA seq
698 aa
AA seq
DB search
MSAKPKAAAKAEKAEPAVPATPIPGADRPAERAGWLRAELERANYAYYVLDQPELPDAEY
DILFKELQQIEAAQPDLITPDSPTLRVGGQVATGFQPVTHDVPMLSLNNGFADEDIVAFD
KRVADALGHTPVEYACELKFDGLAISLRYDDGVFVQASTRGDGATGEEVTENVRTIHSIP
LKLKGKNIPKRLDVRGEVLMFKRDFERLNARQREAEQREFANPRNAAAGGLRQLDSKMTA
QRKLSFFAYGIGVLEGAEMPPSHSALLDWYKQMGLPVNAERGVVKGADGLLAFFHRTGEK
RDGLPYDIDGVVYKVNQRDEQDKLGFVSRAPRFALAHKFPAQEALTQLLAIDVQVGRTGA
ITPVARLMPVFVGGATVTNATLHNEDEVRRKDIRIGDTVIVRRAGDVIPEVVGAILDRRP
DDAREFVMPTACPVCGSKIERLPDEAIARCTGGLICPAQRKQALWHFAQRRALDIDGLGE
KIIDQLVEQNIVRTPADLFNLGVAKLAALDRFADKSAQNLFDSIGKAKHTTLPRFLYALG
IRHVGESTAKDLAKHFGSLDPIMAASVEELLEVNDVGPVVAESLHNFFSEEHNQMVIEQL
RAPGNVTWPEGPPAPKAPQGVLAGKTVVLTGTLPTLSREDAKEMLEAAGAKVAGSVSKKT
DYVVAGAEAGSKLVKAEELGVPVLDEDGMRKLLEGETP
NT seq
2097 nt
NT seq
+upstream
nt +downstream
nt
atgtccgccaaaccgaaagccgctgccaaagcagaaaaagcagagcccgctgttccagct
acgcccattccgggcgccgaccgtccggccgagcgcgccgggtggctgcgcgcggaactc
gagcgtgcgaactacgcgtattacgttctcgaccagccggagctgcctgacgccgaatac
gacattctgttcaaggaactacagcagatcgaggcggcgcaacctgacctgatcacgccg
gattcgcccacgttgcgggtcggcggtcaggtcgcgacaggtttccagccggtcacgcac
gacgtgcccatgctgtcgctgaacaacggctttgccgacgaagatatcgttgcattcgac
aaacgcgtcgctgacgcactcggccatacgcccgtggaatatgcgtgcgagctgaaattc
gacggcctcgccatttcgctgcggtatgacgacggcgtgttcgttcaggcgtcgacgcgc
ggtgacggcgcgacaggcgaagaagtgaccgaaaacgttcgcaccattcattcaattccg
ttgaaactcaaaggcaagaacatcccgaagcggctcgacgtccgtggcgaagtgctgatg
ttcaagcgtgactttgagcggctgaacgcccggcagcgcgaggcggagcaacgtgaattc
gccaacccgcgcaatgcggctgcaggcggtctacggcagctcgattcgaagatgaccgcg
cagcggaagctgtctttttttgcgtatgggatcggtgtgctggaaggcgcggaaatgccg
ccgtcgcactcggcgctgctcgactggtacaagcaaatgggcctgccggtgaacgcggag
cgcggtgtcgtgaagggcgcggacgggttgctcgcttttttccacaggaccggcgagaag
cgcgatggtttgccgtatgacatcgacggcgtggtttataaggtcaatcagcgcgacgaa
caggacaagctgggatttgtctcgcgtgcaccgcgcttcgcgcttgcacacaagtttccg
gcgcaggaagcgctgacgcagttgctggccatcgacgtgcaggtcgggcggaccggcgca
atcacaccggtcgcgcggttgatgccggtgttcgtcggcggcgcgaccgtgacgaacgcg
accttgcacaacgaagacgaagtacggcgcaaggacattcgtattggcgatacggtgatc
gtgcgacgtgccggcgacgtgattcccgaagttgtcggcgcgatcctggatcgtcgtccc
gacgacgcgcgcgagttcgtgatgccgaccgcgtgtccggtgtgcggttcgaaaatcgaa
cggctgcccgacgaagccatcgcccgttgtaccggtggcctgatctgtcccgcccaacgc
aagcaggcgctgtggcatttcgcgcagcggcgcgcgctggatatcgacggactgggtgag
aagatcatcgaccaactggtcgaacagaacattgtgcgcacgccggccgatctgttcaat
ctgggcgtcgcgaagctcgcggcgctggaccggttcgccgacaaatctgcccagaatcta
ttcgattccatcggcaaggccaagcacaccaccttgccgcggtttctctatgcgctgggt
attcggcacgtgggcgagtccaccgcgaaggatctcgccaagcattttggttcgctcgat
ccgatcatggcggcaagcgtcgaagaattgctcgaagtgaacgacgtgggtccggtcgtg
gccgaatcgctgcacaattttttcagcgaagagcacaaccagatggtgatcgagcaattg
cgcgcgccgggcaacgtcacatggcccgaagggccgccggcgcccaaggcgccgcaaggt
gtgctcgccggcaagacggtcgtgctgaccggtacgctgcctacgctttcgcgcgaggac
gccaaggaaatgctcgaggctgcgggcgcgaaggtggcaggctcggtatcgaagaaaacg
gattacgtggtggctggagcggaggcgggcagcaagctcgtgaaggccgaggaactcggc
gttccggtactcgacgaagatggtatgcgcaagcttttggagggagaaacaccatga
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