Bacteroides uniformis: Bun01g_28180
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Entry
Bun01g_28180 CDS
T06523
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bun
Bacteroides uniformis
Pathway
bun03030
DNA replication
bun03410
Base excision repair
bun03420
Nucleotide excision repair
bun03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bun00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Bun01g_28180 (ligA)
03410 Base excision repair
Bun01g_28180 (ligA)
03420 Nucleotide excision repair
Bun01g_28180 (ligA)
03430 Mismatch repair
Bun01g_28180 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bun03032
]
Bun01g_28180 (ligA)
03400 DNA repair and recombination proteins [BR:
bun03400
]
Bun01g_28180 (ligA)
Enzymes [BR:
bun01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Bun01g_28180 (ligA)
DNA replication proteins [BR:
bun03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Bun01g_28180 (ligA)
DNA repair and recombination proteins [BR:
bun03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Bun01g_28180 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Bun01g_28180 (ligA)
MMR (mismatch excision repair)
DNA ligase
Bun01g_28180 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Bun01g_28180 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
RNA_pol_A_CTD
BRCT_2
HHH_8
EAD10
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
BBK88448
UniProt:
A0A4Y1VJ01
LinkDB
All DBs
Position
3542208..3544205
Genome browser
AA seq
665 aa
AA seq
DB search
MTVKEKIDQLRAELHQHNYNYYVLNAPEISDKEFDDLMRELQDLEKEHPEYQDDNSPTMR
VGSDLNKNFTQVAHKYPMLSLGNTYSENEVTDFYERVKKALNEDFEICCELKYDGTSISL
TYEDGKLVRAVTRGDGEKGDDVTDNVKTIRTIPLVLHGDYPKSFEIRGEILMPWVVFEEL
NREKEAREEPLFANPRNAASGTLKLQNSAIVASRKLDAYLYYLLGEELPCDGHYENLQAA
ASWGFKTSEHTRKAHSLEEVFEYINYWDTERKNLPVATDGIVLKVNSLRQQKNLGFTAKS
PRWAIAYKFQAERALTRLNRVTYQVGRTGAVTPVANLDPVQLSGTIVKRASLHNADIIEG
LDLHIGDMVYVEKGGEIIPKITGVDKDARSMLIGEKVKFITHCPECGSKLIRFEGEAAHY
CPNETACPPQIKGKIEHFISRKAMNIDGLGPETVDMFYRLGLIKDTADLYQLKTDDIKNL
ERMGEKSAENIVNGIAASKEVPFERVLFALGIRFVGETVAKKIAKSFTDIEELENADLEK
LKNIDEIGEKIAQSIITYFSNPANRELVERLKSNGLQLHRTEEDLSGYTDKLAGRSIVIS
GVFTHHSRDEYKEMIEKNGGKNVGSISSKTSFILAGENMGPAKLEKAQKLGVKIMSEDEF
LALLS
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atgactgtaaaagaaaaaatagaccagctccgtgcggaattacaccagcacaactacaat
tattatgtgctgaatgctcctgaaatatccgacaaggagtttgacgacctgatgcgcgag
ctacaagacttagagaaagaacatcctgaataccaagatgataattcgcccacgatgcgt
gtagggagtgatttgaataagaactttacacaagtggcacacaaatatcccatgctttca
ttgggaaacacctattccgaaaacgaagtgaccgacttttacgaacgggtaaagaaagcg
ttgaatgaggattttgaaatctgctgcgagctgaagtatgacggtacttccatctcgctg
acttacgaggatggcaaactggtgcgtgccgtcacccgtggcgacggcgaaaagggcgat
gacgtgacggacaatgtaaagacaatccgaacgattccactggtcctccatggggattat
cctaaatcattcgaaatcagaggggaaatcctgatgccctgggtggttttcgaagaactg
aaccgggaaaaggaagcacgtgaggaaccgcttttcgccaatccgcgcaacgctgcttcc
ggtaccttgaagttgcagaattccgccatcgtagcatccagaaagctggatgcttatctc
tactatctattgggagaggaattgccctgcgacggccattacgagaatctgcaagccgcc
gccagctggggatttaaaacatcagagcacaccagaaaagcccacagcctggaggaagtc
ttcgaatacatcaattattgggacacggagcgtaagaaccttccggtagctactgatggt
attgtactaaaagtcaacagcttgagacaacaaaagaatttgggattcacagccaagtcc
ccccggtgggccatcgcatacaaattccaggcagaacgtgcactgacacgcttgaatagg
gttacctaccaagtaggacgtaccggcgcagtcactccggttgccaatctggaccccgta
caactgtccggtaccattgtgaaacgtgcctccctgcacaatgcagatattatcgagggg
ctggacctgcatataggcgacatggtgtatgtggaaaaaggcggtgaaatcatccccaaa
ataaccggtgtcgataaggatgcccgcagtatgcttatcggtgaaaaagtgaagttcatc
acccattgtcccgaatgcggcagcaaactgatacgttttgaaggagaagcagcccactat
tgccccaatgaaaccgcttgtcctccgcagattaaagggaaaatagagcatttcatcagc
cgcaaagccatgaatatagacggactgggacctgaaacagtagatatgttctaccgattg
ggactgataaaggatactgcagatttataccagctcaaaaccgatgacatcaagaacctg
gaacggatgggcgaaaaatcggcagaaaacatagtcaacggtattgcggcaagtaaagaa
gtgccattcgaaagagtgctctttgcactgggcatacgcttcgtgggagaaacggttgcc
aagaagatagccaagtcctttacggacatcgaagaactggaaaacgcagacctcgaaaag
ctgaaaaacatcgatgaaatcggtgaaaaaatagcgcagagcattataacctacttctcc
aatcctgccaacagagagctggtggaacggctgaaatcgaacggtctgcaactccaccgg
acggaagaagacctcagcggatacaccgacaaactggcgggccggtccattgtcatcagc
ggcgtattcacccaccactcacgggacgaatacaaagagatgattgaaaagaacggtggg
aaaaacgtcggcagtatctcctccaaaaccagctttatcctggccggagaaaatatggga
cctgccaaactggagaaagcgcagaaactgggagtaaagattatgagcgaagatgagttt
ttggcattgctatcctaa
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integrated database retrieval system
