Caballeronia insecticola: BRPE64_ACDS11820
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Entry
BRPE64_ACDS11820 CDS
T02684
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
buo
Caballeronia insecticola
Pathway
buo03030
DNA replication
buo03410
Base excision repair
buo03420
Nucleotide excision repair
buo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
buo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BRPE64_ACDS11820 (ligA)
03410 Base excision repair
BRPE64_ACDS11820 (ligA)
03420 Nucleotide excision repair
BRPE64_ACDS11820 (ligA)
03430 Mismatch repair
BRPE64_ACDS11820 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
buo03032
]
BRPE64_ACDS11820 (ligA)
03400 DNA repair and recombination proteins [BR:
buo03400
]
BRPE64_ACDS11820 (ligA)
Enzymes [BR:
buo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BRPE64_ACDS11820 (ligA)
DNA replication proteins [BR:
buo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BRPE64_ACDS11820 (ligA)
DNA repair and recombination proteins [BR:
buo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BRPE64_ACDS11820 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BRPE64_ACDS11820 (ligA)
MMR (mismatch excision repair)
DNA ligase
BRPE64_ACDS11820 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BRPE64_ACDS11820 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
HHH
PTCB-BRCT
MctB
Nlig-Ia
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
BAN22936
UniProt:
R4WVH5
LinkDB
All DBs
Position
1:1233523..1235595
Genome browser
AA seq
690 aa
AA seq
DB search
MSAKKKAESAVQSEAPVPSADRPAERAAWLRSELERANYAYYVLDQPDLPDAAYDTLFKE
LQGIEAEHPDLITPDSPTQRVGGEVAEGFTPVVHDVPMLSLNNGFADEDIAAFDKRVSDA
LGHAPVEYACELKFDGLAISLRYDDGHFVQAATRGDGATGEDVTANVRTIRSIPLTLKGK
NPPKRLDVRGEVLMFKRDFERLNARQREAGQREFANPRNAAAGGLRQLDPKMTAQRSLSF
FAYGIGVLEGADMPATHAALLDWYKEMGLPVNAERAVVEGAEGLLGFFRKTGEKRETLPY
DIDGVVYKVNARAQQDQLGFVSRAPRFALAHKFPAQEALTELLAIDVQVGRTGAITPVAR
LAPVFVGGATVTNATLHNEDEVRRKDIRIGDTVIVRRAGDVIPEVVGAILERRPADAREF
VMPTECPVCGSKIERLPDEAIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEKIIDQL
VEQNLVRTPADLFNLGFATLAALDRFADKSAQNLLDSLDKARKTTLARFIYALGIRHVGE
STAKDLAKHFGSLTPILSASVEELLEVNDVGPVVAEAIHNFFSEEHNQHVIEQLRANVSW
PEGPPAPRAPQGVLAGKTVVLTGTLPTLSREEAKEMLETAGAKVAGSVSKKTDYVVAGAE
AGSKLVKAEELGVPVLDEDGMRKLLEGVTP
NT seq
2073 nt
NT seq
+upstream
nt +downstream
nt
atgtccgcaaaaaagaaagccgagtccgccgtccagtcggaagcccccgtgcccagcgcc
gatcgtccggccgagcgcgcggcgtggctgcgctcggaactggagcgcgcgaattacgcg
tactacgtgctggatcagccggatctgcccgatgccgcctacgacacgctgttcaaggaa
ttgcagggaatcgaagccgagcatccggacctgatcacgccggattcgccgacgcagcgc
gtgggcggcgaagtggccgaaggttttacgcctgtcgttcacgacgtgccgatgctttcg
ctcaacaacggctttgcggatgaagacatcgccgcgttcgacaagcgcgtgtcggacgcg
ctgggccacgcgccggtcgagtacgcgtgcgaactgaagttcgacgggctcgccatttcg
ctgcgttatgacgacggccatttcgtgcaagccgcaacgcgcggcgacggcgccaccggc
gaagacgtaaccgccaacgtccgcaccatccgatcgattccgttgacgctcaagggcaag
aatccgcccaaacgactcgacgtgcgcggcgaagtgctgatgttcaagcgcgatttcgaa
cgtctgaacgcgcgccagcgcgaggccgggcagcgcgaattcgcgaatccgcgtaacgcg
gcagcgggcggcctgcgtcagctcgatccgaagatgaccgcgcaacgctcgctgtcgttc
ttcgcatacggcatcggcgtgctggaaggcgcggacatgcccgccacgcacgcggcactg
ctcgactggtacaaggagatgggcttgccggtgaacgcggagcgcgcggtggtcgaaggc
gcggaaggcttgctcggcttctttcgcaaaacgggcgagaagcgcgagacgctgccgtac
gacatcgacggcgtcgtctacaaagtgaacgcgcgcgcgcagcaggaccaactcggcttc
gtgtcgcgtgcgccgcgctttgcgctcgcgcacaagtttccggcgcaggaagcgctgacg
gaactgctggcgatcgacgtgcaggtcggccgcacgggcgcgatcacgccggtcgcgcgt
ctcgcgccggtgttcgtcggcggggcgaccgtcacgaacgcgacgctgcacaacgaggac
gaggttcgccgcaaggacatccgcatcggcgatacggtaatcgtgcggcgcgcgggcgac
gtgattcccgaagtcgtcggcgcgattctggaacggcgtccggccgacgcgcgcgagttc
gtcatgccgacggaatgcccagtctgcggctcgaagatcgagcgtctcccggacgaagcc
atcgcgcgctgcacgggcgggctgttctgtccggcccagcgcaagcaggcgctgtggcac
ttcgcgcagcgccgcgcgctcgatatcgacgggctcggcgagaagatcatcgatcaactg
gtcgagcagaatctcgtgcgcacgcccgccgatctctttaacctgggtttcgcgacgctg
gcggcgctcgaccgtttcgccgacaagtccgcgcagaatctgctcgactcgctcgacaag
gcacgcaagacgacgctcgcgcgcttcatctatgcgctcggcatccggcatgtcggcgaa
tcgactgcgaaggatctggccaagcatttcggctcgctgactccgattctgtcggcctcg
gtcgaggaattgctcgaagtcaacgatgtcggcccggtggtcgccgaggccattcacaat
ttctttagcgaagagcacaaccagcacgtgatcgagcagttgcgcgcgaacgtgtcgtgg
ccggaagggccgcccgcgccgagggcgccccagggcgtgctggccggcaagacggtcgtg
ctgacgggcacgttgcccacgctctcgcgcgaagaagcaaaggagatgctggagacggct
ggcgccaaggtggccggctcggtatcgaagaagaccgactacgtcgtggcgggcgcggaa
gcgggcagcaagctcgtgaaagcggaagaactcggggttcccgtcctcgacgaagacggc
atgcgtaagcttttggaaggagtcactccatga
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