Burkholderia lata: Bcep18194_A5334
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Entry
Bcep18194_A5334 CDS
T00286
Name
(GenBank) DNA ligase (NAD+)
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bur
Burkholderia lata
Pathway
bur03030
DNA replication
bur03410
Base excision repair
bur03420
Nucleotide excision repair
bur03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bur00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Bcep18194_A5334
03410 Base excision repair
Bcep18194_A5334
03420 Nucleotide excision repair
Bcep18194_A5334
03430 Mismatch repair
Bcep18194_A5334
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bur03032
]
Bcep18194_A5334
03400 DNA repair and recombination proteins [BR:
bur03400
]
Bcep18194_A5334
Enzymes [BR:
bur01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Bcep18194_A5334
DNA replication proteins [BR:
bur03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Bcep18194_A5334
DNA repair and recombination proteins [BR:
bur03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Bcep18194_A5334
NER (nucleotide excision repair)
GGR (global genome repair) factors
Bcep18194_A5334
MMR (mismatch excision repair)
DNA ligase
Bcep18194_A5334
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Bcep18194_A5334
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
MctB
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
ABB08928
UniProt:
Q39F38
LinkDB
All DBs
Position
1:complement(2388447..2390522)
Genome browser
AA seq
691 aa
AA seq
DB search
MARTQAEPPASQPDARAAWLRDQLERANYAYYVLDQPDLPDAEYDRLFRELQQLETDHPE
LVTPDSPTQRVGGEAAGGFTPVVHDAPMLSLNNGFADEDIAAFDKRVADALDKTTDLAGS
VTEPVEYACELKFDGLAISLRYEQGVFVQASTRGDGTTGEDVTENVRTIRSIPLKLKGKH
VPAVLDVRGEVLMFKRDFARLNERQRAAEQREFANPRNAAAGSLRQLDSKITAQRPLSFF
AYGIGVLDGMPMLDTHSALLDWYESLGLPVNREREVVQGAEGLLGFFRKIGEKRESLPYD
IDGVVYKVNRRDEQERLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARL
EPVFVGGATVTNATLHNEDEVRRKDIRIGDTVIVRRAGDVIPEVVGALLDRRPADAAEFV
MPTECPVCGSKIERLPDEAIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEKIIDQLV
ELNLVRTPADLFNLGFATLAELDRFAEKSAQNLLDSLEKAKHTTLARFIYGLGIRHVGES
TAKDLAKHFGSLTPIMDASIEELLEVNDVGPIVAESLHQFFAEEHNRTVIEQLRAPGKVT
WPEGPPAPKAPQGVLAGKTVVLTGTLPTLTRDAAKEMLEAAGAKVAGSVSKKTDYVVAGA
EAGSKLVKAEELGIPVLDEDGLHQLLEGNTP
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atggcccgaacccaagccgaaccgccagccagccagcccgacgcgcgcgccgcgtggctg
cgcgatcaactcgagcgggcgaactacgcctactacgtgctcgaccagccggatctgccc
gacgccgaatacgaccggttgttccgcgaactgcagcagctcgaaaccgaccatcccgaa
ctcgtgacgcccgattcaccgacgcaacgcgtcggtggcgaggcggccggcggcttcacg
ccggtcgtccatgacgcgccgatgctgtcgctgaacaacggcttcgccgacgaggacatc
gccgcattcgacaagcgtgtcgccgacgcgctcgacaagacgaccgatctcgccggctcg
gtgacggagcctgtcgaatacgcgtgcgagctgaagttcgacggcctcgcgatctcgctg
cgctacgagcagggcgtattcgtgcaggcgtcgacgcgcggtgacgggacgacgggcgag
gacgtgaccgagaacgtgcgcacgatccgctcgattccgctgaagctgaagggtaagcat
gtgccggccgtactcgacgtgcgcggcgaggtgctgatgttcaagcgcgatttcgcgcgc
ctgaacgaacgccagcgcgcggccgagcagcgcgaattcgcgaacccgcgcaacgcggcg
gccggtagcttgcgccagctcgactcgaagatcaccgcgcagcgtccgctgtcgttcttc
gcgtacgggatcggcgtgctcgacgggatgccgatgctcgatacgcacagcgcgctgctc
gactggtacgagtcgctcggcctgcccgtgaaccgcgagcgcgaggtcgtgcaaggcgcc
gaaggcttgctcggtttcttccgcaagattggcgagaagcgcgaatcgctgccgtacgac
atcgacggtgtcgtctacaaggtcaaccggcgtgacgagcaggagcgcctcggcttcgtg
tcgcgcgcgccgcgctttgcgctcgcgcacaagttccccgcgcaggaagcgctgaccaag
ctcgtcgcgatcgacgtgcaggtcggccgcacgggcgcgatcacgccggtcgcgcgcctc
gagcccgtgttcgtcggcggtgcgaccgtgacaaacgcgacgctgcataacgaggacgaa
gtacgacgcaaggacatccggatcggcgataccgtgatcgtgcgccgcgcgggcgacgtg
atccccgaggtggtcggcgcgctgctcgaccggcgcccggccgatgcggccgaattcgtg
atgccgaccgaatgtccggtgtgcggttcgaagatcgagcgcctgccggacgaggcgatc
gcgcgctgcacgggcggcctgttctgcccggcacagcgcaagcaggcgctgtggcacttc
gcgcagcgccgcgcgctcgacatcgacgggctcggcgagaagatcatcgaccagctcgtc
gagctgaatctcgtgcgcacgccggccgacctgttcaatctcggctttgcgacgctcgcc
gagctcgaccggttcgccgagaagtcggcacagaatctgctcgactcgctcgagaaggcg
aagcatacgacgctcgcgcgcttcatctacgggctgggtatccgtcatgtgggcgaatcg
accgcgaaggatctcgcgaagcatttcggctcgctgacgccgatcatggacgcatcgatc
gaagaactgctcgaagtcaacgacgtcgggccgattgtcgccgagtcgctccatcagttc
ttcgcggaagagcacaaccggaccgtgatcgagcagttgcgcgcaccgggcaaggtcacg
tggccggaagggccgcctgcgccgaaggcgccgcagggcgtgctggccggcaagacggtc
gtgctgacgggcacgctgccgacgctcacgcgcgatgccgcgaaggaaatgctcgaagcg
gcgggcgcgaaggtcgccggttcggtatcgaagaagacggattacgtggtcgcgggcgcc
gaagccggcagcaagctcgtgaaggccgaggaactcggcatccccgtgctggacgaagac
ggtctgcaccaactcctggagggcaatacgccatga
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