Burkholderia sp. MS389: GJG85_10670
Help
Entry
GJG85_10670 CDS
T10544
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
burm Burkholderia sp. MS389
Pathway
burm03030
DNA replication
burm03410
Base excision repair
burm03420
Nucleotide excision repair
burm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
burm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GJG85_10670 (ligA)
03410 Base excision repair
GJG85_10670 (ligA)
03420 Nucleotide excision repair
GJG85_10670 (ligA)
03430 Mismatch repair
GJG85_10670 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
burm03032
]
GJG85_10670 (ligA)
03400 DNA repair and recombination proteins [BR:
burm03400
]
GJG85_10670 (ligA)
Enzymes [BR:
burm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
GJG85_10670 (ligA)
DNA replication proteins [BR:
burm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
GJG85_10670 (ligA)
DNA repair and recombination proteins [BR:
burm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
GJG85_10670 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GJG85_10670 (ligA)
MMR (mismatch excision repair)
DNA ligase
GJG85_10670 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
GJG85_10670 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
MctB
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
QRR13849
LinkDB
All DBs
Position
1:complement(2296623..2298698)
Genome browser
AA seq
691 aa
AA seq
DB search
MARTQAEPPASQPDARAAWLRDQLERANHAYYVLDQPDLPDAEYDRLFRELQQLETDHPE
LVTPDSPTQRVGGEAADGFTPVVHDAPMLSLNNGFADEDIVAFDKRVADALAKTTDLAGS
VTDPVEYACELKFDGLAISLRYEQGVFVQAATRGDGTTGEDVTENVRTIRSIPLKLKGKH
VPAVLDVRGEVLMFKRDFARLNERQRAAEQREFANPRNAAAGSLRQLDSKITAQRPLSFF
AYGIGVLDGMPMPDTHSALLDWYEAFGLPVNRERAVVHGAEGLLDFFRKVGEKRESLPYD
IDGVVYKVNRRDEQERLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARL
EPVFVGGATVTNATLHNEDEVRRKDIRIGDTVIVRRAGDVIPEVVGALLDRRPADAAEFV
MPTECPVCGSKIERLPDEAIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEKIIDQLV
ELNLVRTPADLFNLGFATLAELDRFAEKSAQNLLDSLEKAKHTTLARFIYGLGIRHVGES
TAKDLAKHFGSLTPIMDASIEELLEVNDVGPIVAESIHQFFAEEHNRTVIEQLRAPGKVT
WPEGPPAPKAPQGVLAGKTVVLTGTLPNLTRDAAKEMLEAAGAKVAGSVSKKTDYVVAGA
EAGSKLAKAEELGIPVLDEDGLHQLLEGNTP
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atggcccgaacccaagccgaaccgccagccagccagcccgacgcgcgcgccgcatggctg
cgcgaccaactcgagcgggcgaaccacgcctattacgtgctcgaccagccggatctgccc
gacgccgaatacgaccggctgttccgtgagctgcagcagctcgaaaccgaccatcccgaa
ctcgtgacgcccgattcgccgacgcagcgcgtcggcggcgaagcggccgacggcttcacg
cccgtcgtccacgatgcgccgatgctgtcgctgaacaacggcttcgccgacgaggacatc
gtcgcgttcgacaagcgcgtcgccgacgcgctcgcgaagacgaccgatctcgccggctcg
gtgacggaccccgtcgaatacgcgtgcgaactgaagttcgacggcctcgcgatttcgctg
cgctacgagcaaggcgtgttcgtgcaggccgcgacgcgcggcgacgggacgacgggcgag
gacgtgaccgagaacgtgcgcacgatccgctcgattccgctgaagctgaagggcaagcac
gtgccggccgtgctcgacgtgcgcggcgaggtgctgatgttcaagcgcgatttcgcacgc
ctgaacgaacgccagcgcgcggccgagcagcgcgaattcgcgaacccgcgcaacgcggcg
gccggcagcctgcgccagctcgactcgaagatcaccgcgcagcggccgctgtcgttcttc
gcgtacgggatcggcgtgctcgacgggatgccgatgcccgacacgcacagcgcgctgctc
gactggtacgaggcgttcggcctgccggtgaaccgcgagcgtgcggtcgtgcacggcgcc
gaaggcttgctcgacttcttccgcaaggtcggcgagaagcgcgagtcgctgccgtacgac
atcgatggcgtcgtctacaaggtcaaccggcgcgacgagcaggagcggctcggcttcgtg
tcgcgtgcgccgcgcttcgcgctcgcgcacaagttccccgcgcaggaagcgctgacgaag
ctcgtcgcgatcgacgtgcaggtcggccgcaccggcgcgatcacgccggtcgcgcgtctc
gagccggtgttcgtcggcggcgcgaccgtgaccaatgcgacgctgcacaacgaggacgaa
gtgcgccgcaaggacatccggatcggcgacaccgtgatcgtgcgccgcgcgggcgacgtg
attccggaagtcgtcggcgcgctgctcgaccggcgcccggcggacgcggccgaattcgtg
atgccgaccgaatgcccggtgtgcggctcgaagatcgagcgcctgccggacgaggcgatc
gcgcgctgcacgggcgggctgttctgcccggcgcagcgcaagcaggcgctgtggcatttc
gcgcagcgccgcgcgctcgacatcgacggcctcggcgagaagatcatcgaccagctcgtc
gagctgaatctcgtgcgtacgccggccgacctgttcaatctcggtttcgcgacgctggcc
gagctcgaccggttcgcggagaagtccgcgcagaatctgctcgattcgctcgagaaggcg
aagcatacgacgctcgcgcgcttcatctacgggctcggcatccgtcatgtcggcgaatcg
accgcgaaggatctcgcgaagcatttcggctcgctgacgccgatcatggacgcgtcgatc
gaggaactgctcgaagtgaacgacgtcgggccgatcgtcgccgagtcgattcaccagttc
ttcgcggaagagcacaaccgcacggtgatcgagcagttgcgcgcgcccggcaaggtcacg
tggccggaagggccgcccgcgccgaaggcgccgcagggcgtgctggccggcaagacggtc
gtgctgacgggcacgctgccgaatctcacgcgcgatgcggcgaaggagatgctcgaagcg
gcgggcgccaaggtggccggttcggtatcgaagaagacggattacgtggtcgcgggcgcc
gaagccggcagcaagctcgcgaaggccgaggaactcggcatccccgtgctggacgaagat
ggtctgcaccaactcctggagggcaatacgccatga
DBGET
integrated database retrieval system
