Burkholderia sp. THE68: BTHE68_10560
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Entry
BTHE68_10560 CDS
T10528
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
burt Burkholderia sp. THE68
Pathway
burt03030
DNA replication
burt03410
Base excision repair
burt03420
Nucleotide excision repair
burt03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
burt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BTHE68_10560 (ligA)
03410 Base excision repair
BTHE68_10560 (ligA)
03420 Nucleotide excision repair
BTHE68_10560 (ligA)
03430 Mismatch repair
BTHE68_10560 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
burt03032
]
BTHE68_10560 (ligA)
03400 DNA repair and recombination proteins [BR:
burt03400
]
BTHE68_10560 (ligA)
Enzymes [BR:
burt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BTHE68_10560 (ligA)
DNA replication proteins [BR:
burt03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BTHE68_10560 (ligA)
DNA repair and recombination proteins [BR:
burt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BTHE68_10560 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BTHE68_10560 (ligA)
MMR (mismatch excision repair)
DNA ligase
BTHE68_10560 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BTHE68_10560 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH
PTCB-BRCT
MctB
BRCT_2
5_3_exonuc
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
BBU27322
LinkDB
All DBs
Position
1:1130294..1132318
Genome browser
AA seq
674 aa
AA seq
DB search
MPSADRPAERAAWLRSELERANYAYYVLDQPDLPDAEYDTLFKELQGIEVEHPDLITPDS
PTQRVGGEVAEGFTPVVHDVPMLSLNNGFADEDIAAFDKRVSDALGHVPVEYACELKFDG
LAISLRYEDGHFVQAATRGDGATGEDVTANVRTIRSIPLTLKGKNVPKRLDVRGEVLMFK
RDFERLNARQRDAGQREFANPRNAAAGGLRQLDPKMTAQRSLSFFAYGIGVLEGAEMPAT
HAALLDWYKEMGLPVNAERAVVQGADGLLAFFGKVGEKREKLPYDIDGVVYKVDRRDEQD
KLGFVSRAPRFALAHKFPAQEALTELLAIDVQVGRTGAITPVARLAPVFVGGATVTNATL
HNEDEVRRKDIRIGDTVIVRRAGDVIPEVVGALLERRPADAGEFVMPTQCPVCGSKIERL
PDEAIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEKIIDQLVEQNLVRTPADLFNLG
FSTLAALDRFADKSAQNLIDSLEKASKTTLPRFIYALGIRHVGESTAKDLAKHFGSLDPI
MAASVEELLEVNDVGPIVAEAIHNFFGEAHNQHVIEQLRAKVSWPEGPPAPKAPQGVLAG
KTVVLTGTLPTLSREQAKEMLEAAGAKVAGSVSKKTDYVVAGADAGSKLAKAEELGVPVL
DEDGMHKLLEGVTP
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
gtgccgagcgccgatcgtccggccgaacgcgcggcgtggttgcgctccgagctggagcgc
gcgaactacgcgtattacgtgctggatcagccggatctgcccgacgccgaatacgacacg
ctgttcaaggagcttcagggcatcgaggtcgaacatccggacctgatcacgcctgattct
ccgacgcagcgcgtaggcggtgaagtcgccgaaggtttcacgccggtcgtccacgacgtg
ccgatgctttcgctcaacaacggcttcgcggacgaggacatcgccgcattcgacaagcgc
gtgtccgacgcgctgggtcacgtgcccgtcgagtacgcgtgcgagctgaagttcgatgga
ctcgcgatttccctgcgctacgaggacggccatttcgtgcaggccgcgacgcgcggcgac
ggcgcgaccggcgaagacgtcacggcgaacgtgcgcaccattcgctcgattccgctcacg
ctgaagggcaagaacgtgccgaagcggctcgacgtgcgcggcgaagtgctgatgttcaag
cgcgacttcgagcgcctgaacgcacgccagcgcgacgccgggcagcgtgaattcgccaat
ccgcgcaacgcggcggcgggcggtttgcgccagctcgacccgaagatgaccgcgcaacgc
tcgctgtcgttcttcgcgtacggcatcggcgtgctggaaggcgccgagatgccggccacg
catgcggcgctgctcgactggtacaaggaaatgggcttgccggtgaatgcggagcgcgcg
gtcgtgcagggcgcggatggcttgctcgcctttttcggcaaggtcggcgagaagcgcgaa
aagctgccgtatgacatcgacggcgtcgtctacaaggtcgatcggcgcgatgagcaggac
aagctcggttttgtatcgcgtgcgccgcgctttgcgctcgcgcacaagtttcccgcgcag
gaagcgttgacggagttgctcgcgatcgacgtgcaggtgggccgcaccggcgcgatcacg
ccggtcgcgcggctcgcgccggtgttcgtcggcggcgcgacggtcaccaacgcgacgctg
cacaacgaggacgaggtgcgccgcaaggacatccgcatcggcgatacggtcatcgtgcgg
cgcgcgggcgacgtgattcccgaagtcgtcggcgcgctgctcgagcgccgtcccgccgac
gcgggcgagttcgtcatgccgacgcaatgcccggtctgcggctcgaagatcgagcgtctg
ccggacgaggcgatcgcgcgctgcacgggcgggctgttctgtccggcgcagcgcaagcag
gcgctgtggcatttcgcgcaacgccgcgcgctcgacatcgacgggctcggcgagaagatc
atcgatcagctggtcgagcagaatctggtgcgtacgcccgccgatctcttcaatctgggt
ttctcgacgctcgcggcgctcgaccgtttcgccgacaagtccgcacagaacctgatcgat
tcgctggaaaaggcgagcaagacgacactcccgcgcttcatctatgcgctgggcatccgg
cacgtgggcgaatcgacggcgaaggatctggccaagcatttcggctcgctcgatccaatc
atggcggcgtccgtggaagagttgctcgaagtcaatgatgtcggtccgatcgttgctgag
gccattcacaacttcttcggcgaagcgcacaaccagcatgtgatcgagcagttgcgcgcg
aaggtgtcatggccggaaggaccgcccgcgcccaaggcgccgcagggcgtgctggcgggc
aagaccgttgtgctgacgggcacgctgcccacgctgtcgcgcgagcaggcgaaggaaatg
cttgaggcggccggcgccaaggtggccggctcggtatcgaagaagaccgactacgtcgtg
gcgggcgccgatgcgggcagcaaactcgcgaaggccgaggaactcggggtcccggttctc
gacgaagacggcatgcacaagcttttggaaggagtcactccatga
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