Burkholderia mayonis: WS70_06845
Help
Entry
WS70_06845 CDS
T06044
Symbol
ligA
Name
(GenBank) aromatic ring-opening dioxygenase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
buu
Burkholderia mayonis
Pathway
buu03030
DNA replication
buu03410
Base excision repair
buu03420
Nucleotide excision repair
buu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
buu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
WS70_06845 (ligA)
03410 Base excision repair
WS70_06845 (ligA)
03420 Nucleotide excision repair
WS70_06845 (ligA)
03430 Mismatch repair
WS70_06845 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
buu03032
]
WS70_06845 (ligA)
03400 DNA repair and recombination proteins [BR:
buu03400
]
WS70_06845 (ligA)
Enzymes [BR:
buu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
WS70_06845 (ligA)
DNA replication proteins [BR:
buu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
WS70_06845 (ligA)
DNA repair and recombination proteins [BR:
buu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
WS70_06845 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
WS70_06845 (ligA)
MMR (mismatch excision repair)
DNA ligase
WS70_06845 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
WS70_06845 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
MctB
5_3_exonuc
zf-HYPF
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
AOJ01577
UniProt:
A0A1B4FD59
LinkDB
All DBs
Position
1:1501233..1503308
Genome browser
AA seq
691 aa
AA seq
DB search
MARSPVEPPASQPAKRAAWLRAELERANYAYYVLDQPELPDAEYDRLFVELQQIEAEHPD
LVTPESPTQRVGGEVASGFTPVMHDTPMLSLNNGFADEDVVAFDKRVADGLDKAADLAGT
VTDPVEYACELKFDGLAVSLRFEDGRFVQASTRGDGTTGEDVTRNIRTIRSIPLKLKGKH
VPRVLDVRGEVLMFKRDFARLNERQRAAGQREFANPRNAAAGSLRQLDSKITASRPLSFF
AYGIGMLDGVDMPDTHGGLLDWYETLGLPVNRERAVVRGAAGLLEFFHAVGARRESLPYD
IDGVVYKVNRRDEQERLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARL
EPVFVGGATVTNATLHNEDEVRRKDIRIGDTVIVRRAGDVIPEVVSAVLERRPADAREFV
MPTACPECGSRIERLPDEAIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEKIIDQLV
EQNLVRTPADLFNLGFSTLVELDRFAEKSAQNLIDSLDKAKHTTLARFVYALGIRHVGES
TAKDLAKHFGSLDPIMDASIEALLEVNDVGPIVAESIHQFFAEEHNRTVIEQLRAPGRVT
WPEGPPAPRAPQGVLAGKTVVLTGTLPTLTRDAAKEMLEAAGAKVAGSVSKKTDYVVAGA
DAGSKLAKAEELGIPVLDEEGMHKLLEGHAR
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atggcccgatccccagttgaaccgcccgccagccagccggcgaagcgtgccgcgtggctg
cgcgccgagctcgagcgggcgaactacgcctattacgtgctcgaccagccggagctgccc
gacgccgagtacgatcgcctcttcgtcgagctgcagcaaatcgaggccgagcaccccgat
ctcgtcacgcccgaatcgccgacgcagcgggtcggcggcgaagtcgcgagcggcttcacg
cccgtcatgcacgacacgccgatgctctcgctcaacaacggctttgccgacgaagacgtc
gtcgcgttcgacaagcgcgtggccgacggcctcgacaaggcggccgacctcgccggcacc
gtgaccgatcccgtcgagtacgcgtgcgagttgaagttcgacggcctcgcggtctcgctg
cgcttcgaggacggccgcttcgtgcaagcgtcgacgcgcggcgacggcacgacgggcgag
gacgtcacccggaacatccgcacgatccgctcgatcccgctgaagctgaagggcaagcac
gtgccgcgcgtgctcgacgtgcgcggcgaagtgctgatgttcaagcgcgatttcgcgcgc
ctgaacgaacgtcagcgcgcggcgggccagcgcgagttcgcgaacccgcgcaacgcggcg
gcgggaagcctccggcagctcgattcgaagatcaccgcgtcgcggccgctgtcgttcttc
gcttacgggatcggcatgctcgacggcgtcgacatgcccgacacgcacggcggcctcctc
gactggtacgagacgctcgggctgccggtgaaccgcgagcgcgcggtcgtgcgcggcgcg
gcgggtctcctcgagtttttccacgcggtcggcgcgcggcgcgagtcgctgccgtacgac
atcgacggcgtcgtctacaaggtgaaccgtcgcgatgagcaggagcggctcggcttcgtg
tcgcgcgcaccgcgttttgcgctcgcgcacaagttccccgcgcaggaggcgctgacgaag
ctcgtcgcgatcgacgtgcaggtcggccgcacgggtgcgatcacgccggtcgcgcgcctc
gagcccgtgttcgtcggcggcgcgaccgtcacgaacgcgacgctgcacaacgaagacgaa
gtgcgccgcaaggacatccggatcggcgacacggtgatcgtgcgccgcgcgggcgacgtg
attcccgaggtggtgtcggctgtgctcgaacgccgaccggcggatgcgcgcgaattcgtg
atgccgacggcgtgtcccgaatgcggatcgcggatcgagcggctgccggacgaggcgatc
gcgcgctgcacgggcgggctcttttgtcccgcgcagcgcaagcaggcgctgtggcacttc
gcgcagcgccgcgcgctcgacatcgacgggctcggcgagaagatcatcgaccagctcgtc
gagcagaacctcgtgcgcacgccggcggatctgttcaacctcggtttctcgacgctcgtc
gagctcgaccgcttcgcggagaagtccgcgcagaacctgatcgattcgctcgacaaggcg
aagcacacgacgctcgcgcgcttcgtctacgcgctcgggatccggcacgtcggcgaatcg
acggcgaaggatctcgcgaagcatttcggctcgctcgatccgatcatggacgcgtcgatc
gaagcgttgctcgaggtcaacgacgtcgggccgatcgtcgccgaatcgatccatcagttc
ttcgccgaggagcacaatcgcacggtgatcgagcaactgcgcgcgccgggccgcgtcacg
tggcccgaagggccgcccgcgccgcgcgcgccgcaaggcgtgctcgcgggcaagaccgtc
gtgctgacgggcacgctgccgacgctcacgcgcgacgcggcgaaggagatgctcgaggcg
gcgggcgcgaaggttgcgggctcggtgtcgaagaaaaccgattacgtcgtcgccggcgcc
gatgcgggcagcaagctcgcgaaggccgaggaactcggcattccggtgctggacgaagag
ggcatgcacaaacttctggagggccacgcgcgatga
DBGET
integrated database retrieval system
