Paraburkholderia phytofirmans OLGA172: AYM40_12745
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Entry
AYM40_12745 CDS
T05111
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
buz
Paraburkholderia phytofirmans OLGA172
Pathway
buz03030
DNA replication
buz03410
Base excision repair
buz03420
Nucleotide excision repair
buz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
buz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AYM40_12745 (ligA)
03410 Base excision repair
AYM40_12745 (ligA)
03420 Nucleotide excision repair
AYM40_12745 (ligA)
03430 Mismatch repair
AYM40_12745 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
buz03032
]
AYM40_12745 (ligA)
03400 DNA repair and recombination proteins [BR:
buz03400
]
AYM40_12745 (ligA)
Enzymes [BR:
buz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AYM40_12745 (ligA)
DNA replication proteins [BR:
buz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AYM40_12745 (ligA)
DNA repair and recombination proteins [BR:
buz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AYM40_12745 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AYM40_12745 (ligA)
MMR (mismatch excision repair)
DNA ligase
AYM40_12745 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AYM40_12745 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
HHH
PTCB-BRCT
MctB
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
ANB73137
UniProt:
A0A161HYJ1
LinkDB
All DBs
Position
1:complement(2914788..2916854)
Genome browser
AA seq
688 aa
AA seq
DB search
MARTPASNPATSAPAERAAWLRAELERANYAYYVLDQPDLPDAEYDKLFKELERIETEHP
DLVVPDSPTQRVGGEASSGFEPVVHDQPMLSLNNGFAGEDIVAFDKRVGDALGKNASEPP
VPVGYAAELKFDGLAISLRYVDGTFVQASTRGDGTTGENVTENVRTIRSIPLKLKGKRVP
HLLDVRGEVLMFKRDFERLNERQRAAEQKEFANPRNAAAGSLRQLDSKITAQRPLSFFAY
GIGVLEGGEMPATHSELLDWYKELGLPVNGERAVVQGAEGLLAFFHAIGEKRDTLPYDID
GVVYKVNRRDEQDALGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARLEP
VFVGGATVTNATLHNEDEVRRKDIRIGDTVIVRRAGDVIPEVVSALLERRPDDAREFVMP
THCPVCGSSIERLPDEAIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEKIIDQLVEQ
NLVRTPADLFNVGFATLAELDRFAEKSAQNLLDSLEKAKHTTLARFIYALGIRHVGESTA
KDLAKHFGSLNPIMDASVEELLEVNDVGPVVAESIQRFFAEEHNRTVIEQLRAPGKVTWP
EGPPAPKAPQGVLAGKTVVLTGTLPTLAREEAKEMLETAGAKVAGSVSKKTDYVVAGAEA
GSKLAKAEELGIPVLDEDGMRKLLEGQL
NT seq
2067 nt
NT seq
+upstream
nt +downstream
nt
atggcccgaacccccgcctcaaaccctgcaaccagcgcgcccgcagagcgggccgcgtgg
ctgcgcgcggaactcgaacgcgccaattacgcgtattacgtgctcgaccagccggacctg
ccggacgcggaatacgacaagctcttcaaggagctggagcggatcgagacggagcatccg
gacctggttgtgccggattcgcccacccagcgcgtgggcggcgaggcgtcgagcggcttc
gagccggtggtgcacgatcagcccatgctgtcgctgaacaatggcttcgcaggcgaagat
atcgtcgcgttcgacaagcgcgtcggcgacgcgctcggcaagaacgcgagcgaaccgccg
gtgccggttggttatgcggctgaactgaagttcgacggccttgccatctcgctgcgttac
gtcgacggcacgtttgtccaggcgtccacgcgcggcgacggcaccaccggcgagaacgtc
accgaaaatgtccgcacgatccgttccattccgctcaagctcaagggcaaacgcgtgccg
catctgctcgacgtgcggggcgaagtgctcatgttcaagcgcgatttcgaacgtctgaac
gagcgccagcgggccgctgagcagaaagaattcgccaatccgcgtaacgctgccgcgggc
agcttgcggcagctcgattcgaagatcacggcgcagcggccactgtcgttcttcgcttat
ggaattggtgtgctcgaaggtggcgagatgccggccacacatagcgaattgctcgactgg
tacaaggaactcggcttgccggtgaatggcgagcgggcggtggtgcagggcgccgaaggc
ttgctggcgttttttcacgccataggcgagaagcgcgacacgctgccttacgatatcgac
ggcgtcgtctataaggtcaaccggcgcgatgagcaggacgcgctcggctttgtctcgcgt
gcgccgcgtttcgccttggcgcacaagttccctgcgcaagaagcactcaccaaactcgtc
gcgatcgacgtgcaggttggccgcaccggcgcgatcacgccggttgcgcggctggagccg
gtgttcgtcggcggcgcgacggtgacgaacgccacattgcacaatgaagacgaagtgcgc
cgcaaagatatccgcatcggcgacacggtgatcgtgcggcgcgccggcgacgtcattccc
gaggtggtgagtgcgctgctcgagcgccgcccggacgacgcccgcgagttcgtcatgccc
acgcactgcccggtgtgcggctcgagcatcgaacggctgccggacgaggcgattgcgcgc
tgcacgggtggcctgttctgcccagcgcagcgcaagcaggcgttgtggcacttcgcgcag
cgccgggcactggatatcgacgggctcggcgaaaagatcatcgatcaactcgtcgagcag
aatctggtgcgcacgccggccgatctgttcaacgtcggctttgcgacgctcgctgaactc
gaccgcttcgccgaaaagtccgcgcagaatctgctcgattcgctcgaaaaggccaagcac
actacgctggcgcgctttatttacgcgctcggtatccggcatgtgggcgaatcgacggcg
aaagatctggccaaacatttcggctcgctgaatccgatcatggatgcctcggtcgaagaa
ttgctggaggtgaacgatgtggggcctgtggtggccgagtcgattcagcgatttttcgcc
gaagagcacaaccgcacggtgatcgagcaactccgcgcgccgggcaaggtcacatggccg
gaagggccgcccgcgccaaaggcgccgcaaggcgtgctggccggcaagacggtcgtattg
accggcaccttgccgacgctcgctcgcgaagaagcgaaagaaatgctcgaaacggccggc
gcgaaagtggccggctcggtgtcgaagaaaaccgactacgtagtggcgggggccgaagcg
ggcagcaagctggcgaaagccgaggaactcggcatcccggtactcgacgaagatggtatg
cgcaagctcctggaggggcagttatga
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